Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq524 102 1e-15 seq694 98.7 2e-14 >seq524 Length=308948 Score = 102 bits (112), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 794389 AGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCG 794448 || || | |||||||||||| ||||| ||||| ||||| |||||||||||||| || || Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCCGAGAAAAAGATTCCTTCC 106179 Query 794449 ACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCAC 794508 || ||||| | || | || ||| ||||||| || ||| | ||||||||| Sbjct 106180 ACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTC----CCCAC--CATTGATCCAC 106233 Query 794509 TTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG 794568 |||| ||||| | ||||| ||| || |||| | ||| || | || | || || Sbjct 106234 CTCATTGCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGC 106293 Query 794569 TGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAG 794628 || ||| || | | ||| || | ||| || |||| | | || |||| ||| Sbjct 106294 CTGTGCTTTTCTGCAGAGTCTTTTATGTAAGTCTCGAGCAATAAACTATACATCTCAGAG 106353 Query 794629 TGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || || || || || || |||||||| ||||| ||| Sbjct 106354 TGTATATTCTCAATAGCAATCTGGAACCCATAGAAG 106389 >seq694 Length=127158 Score = 98.7 bits (108), Expect = 2e-14 Identities = 188/271 (69%), Gaps = 12/271 (4%) Strand=Plus/Minus Query 794397 CTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 |||||||||||| |||||||||||||| || || |||||||| || ||||| || || Sbjct 31777 CTTCTTGAGCCAGAAGATGGCACAGAAGCTACCAGAGAAAAAAATCCCCTCAACACAAGC 31718 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | || | || ||| ||||| | || ||| | |||||||| |||| || Sbjct 31717 AAAAGCAACAATCCTCTCAGCAAACGACTC----CCCAC--CATTGATCCATCTCATGGC 31664 Query 794517 CCACTCTGCCTT--TTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574 ||||| ||||| |||| ||| | || | || || | || |||| || || Sbjct 31663 CCACTTAGCCTTCCTTTCGACAC--ACGGGATGGTCTCAACTGCATGAAACAGCCTGTGT 31606 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGA-TGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 ||||| || ||||| | || || |||| | ||| | || |||| || || || Sbjct 31605 TTCTCATTGGGATCCTTTATATACGTCTCGAGCAACAAGCTA-TACATCTCAGAATGTAT 31547 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| || || || |||||||||||||||||| Sbjct 31546 GTTCTCAATTGCAATCTGGAAGCCATAAAAG 31516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915314984343884