Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq187 96.9 3e-15 seq1646 89.7 4e-13 seq139 87.8 1e-12 seq1083 84.2 2e-11 >seq187 Length=363338 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || || || | || ||||| ||||| ||| | || |||| ||| Sbjct 41827 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCTC- 41769 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || || ||| ||||| || || | ||| ||||| Sbjct 41768 CGACACCATCGACAACGTTAAGGCGAAAATTCAAGATAAGGAGGGAATTCCCCCAGATCA 41709 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | ||| ||||||||||| ||||||| || | || |||||||| Sbjct 41708 ACAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGACGGACGTACCCTTGCCGACTACAA 41649 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| ||||| |||| Sbjct 41648 CATCCAGAAGGAGTCTACCCTGCACTTGGT 41619 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || || || ||||| ||||| ||| | || ||| ||| Sbjct 22222 ATGCAAATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCTTGGAGGTTGAGAGCTC- 22164 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || || ||| || || || || | ||| |||||| Sbjct 22163 CGACACCATAGACAACGTCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCGGATCA 22104 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||||||||||||||||| | || | || || ||||| Sbjct 22103 GCAGAGGCTCATCTTCGCCGGTAAACAGCTGGAGGACGGCCGCACCCTAGCTGATTACAA 22044 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||| ||| ||||| |||| Sbjct 22043 CATCCAGAAGGAGAGTACCCTGCACTTGGT 22014 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || || || ||||||||| | || |||| ||| Sbjct 42055 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATTACCCTTGAGGTGGAGAGCTC- 41997 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || ||||| | ||| |||||| Sbjct 41996 CGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCA 41937 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || |||||||| ||||||| || | || |||||||| Sbjct 41936 GCAAAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGTACCCTTGCCGACTACAA 41877 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || |||||||| || | ||| ||||| | || || |||||| Sbjct 41876 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGTT--GAGGGG 41832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || |||||||| || | || || || ||||| ||| | || |||| ||| Sbjct 22679 AATGCAGATATTTGTCAAGACGCTTACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTC 22620 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || ||| |||||| || || ||||| | ||| ||||| Sbjct 22619 -CGACACCATAGACAATGTTAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATC 22561 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||||| ||||||| || | || ||||||| Sbjct 22560 AGCAGAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGTCGTACGCTAGCTGACTACA 22501 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 | || || ||||| ||| || ||| |||| | | ||| |||| || Sbjct 22500 ATATCCAGAAGGAAAGTACCTTACACTTGGTCCTACGTTTGAGAGGTGG 22452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| || ||||| || || || ||| | || |||| ||| Sbjct 29888 ATGCAAATCTTCGTCAAAACGTTGACAGGGAAGACTATCACCTTGGAGGTGGAGAGCTC- 29830 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||| ||||| ||||| | ||| || || Sbjct 29829 CGACACGATCGATAACGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCCCCCGACCA 29770 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||||| ||||| | || | || || || || Sbjct 29769 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGGCGTACCCTAGCTGATTATAA 29710 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || ||||||||||| | ||| ||||| | || || |||||| Sbjct 29709 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCAGGTT--GAGGGG 29665 >seq1646 Length=84127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||||||||| ||| | || ||| | | Sbjct 61869 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAAACCATCACCCTTGAGGTTGAGAGTTCC 61810 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| ||| Sbjct 61809 GACACTATTGACAACGTCAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 61750 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || || || ||||| | || | || ||||||||| Sbjct 61749 CAGAGGCTCATCTTCGCCGGAAAGCAACTCGAGGATGGGCGTACCCTTGCTGACTACAAC 61690 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || ||||||||||| | ||| ||||| | || || |||||| Sbjct 61689 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCAGGTT--GAGGGG 61646 >seq139 Length=432677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || || ||||||||||| | || ||| ||| Sbjct 178330 ATGCAGATCTTTGTTAAGACCTTGACCGGTAAAACCATTACACTTGAGGTTGAGAGCTCT 178271 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | ||||| ||||| |||||||| || | || ||||| Sbjct 178270 -GATACAATCGACAACGTAAAGGCGAAGATCCAGGATAAAGAGGGTATTCCTCCAGATCA 178212 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| || || | ||| | || ||||| || Sbjct 178211 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTATAA 178152 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || || ||| |||| Sbjct 178151 CATTCAGAAGGAGTCGACTTTACACTTGGT 178122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || || || || || ||| |||| ||| | Sbjct 178786 ATGCAGATATTTGTCAAAACCCTTACCGGAAAGACTATAACCCTCGATGTGGAAAGTCCT 178727 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||||||| || ||| || || || ||||| ||| | || |||||| Sbjct 178726 GATACTGTCGAAAGTGTCAAATCCAAAATACAAGACAAAGAGGGCATCCCGACAGATCAG 178667 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | ||| | || ||||||||| Sbjct 178666 CAGAGGCTAATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGAACCCTAGCTGACTACAAC 178607 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || | || ||||| Sbjct 178606 ATTCAGAAGGAATCAACCCTTCATCTGGTG 178577 >seq1083 Length=90715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGA-GGCTGG 107614 ||||| || ||||| ||||| |||| || |||||||| ||| |||| ||| |||| Sbjct 36575 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAAACCATCACCCTCGAGGTGGAAGGCTC- 36517 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| || || || ||||| || | || ||||| Sbjct 36516 CGACACAATCGACAACGTGAAATCGAAAATACAGGACAAAGAGTGCATCCCGCCAGATCA 36457 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||||| || | ||| || ||||| || ||||| | || | || |||||||| Sbjct 36456 GCAAAGACTCATCTTTGCTGGAAAACAACTCGAGGATGGTCGCACTTTAGCCGACTACAA 36397 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 36396 CATACAGAAGGAGTCTAC 36379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398834234360884