Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq194 212 7e-50 seq471 132 5e-26 seq60 84.2 2e-11 >seq194 Length=269275 Score = 212 bits (234), Expect = 7e-50 Identities = 244/327 (75%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 159248 CTTTGGGGTGGCC-GCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGA 159306 |||||| || || || ||||| | ||| | ||||| | ||||| || || ||||||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 159307 CACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTG 159366 | | ||||| || ||||||||||||||||| ||| | |||| | || | |||| || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 159367 CTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT 159426 |||||||||| | || || |||||||| |||| || ||||| || ||||| || | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 159427 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCT 159486 | || ||| | ||||||||| || || |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 159487 TCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGT 159546 | ||||| || ||||| || |||| |||||||| || || ||| | ||||||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 159547 TGTTTGTGCCTGTTATGGGTCTATGGA 159573 | ||||| || || | ||| |||||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 125 bits (138), Expect = 8e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 159054 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT 159113 || || || |||| |||||| || ||||||||||| |||| ||||| ||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 159114 CGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTC 159172 || || |||||||| || || ||| || | | ||||| || ||||| ||| | ||||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAATGCAATTACATTCTC 237916 Query 159173 TGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTG 159232 ||| || |||||| ||||||| | ||| | || || ||||| ||||||| |||| Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTTG 237856 Query 159233 GTTTTT 159238 |||||| Sbjct 237855 GTTTTT 237850 >seq471 Length=100806 Score = 132 bits (146), Expect = 5e-26 Identities = 200/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 158904 TGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCAGC 158962 ||||||| |||||| | || | ||||||| | | ||| ||||| ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 158963 AGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 159022 |||||| | || ||| || | | | |||||| | || | |||||||||||| | || Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 159023 TCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 159082 ||||| ||||| | ||| ||| | || || || |||| |||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 159083 CGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGG 159142 |||||| || | ||||| ||||||||| | | || |||||||| || || || | | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTG 70420 Query 159143 TA--TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 159178 || | ||||| || ||||| ||||| |||||||| || Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 159594 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 159653 || || |||| || | |||||||| || ||||| ||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 159654 GATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCT 159713 ||||| |||||||| || ||||||||||| || ||||| | || || || | |||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 159714 TGG 159716 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545213919804480