Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03]
8,756 sequences; 309,692,940 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq194 212 7e-50
seq471 132 5e-26
seq60 84.2 2e-11
>seq194
Length=269275
Score = 212 bits (234), Expect = 7e-50
Identities = 244/327 (75%), Gaps = 1/327 (0%)
Strand=Plus/Plus
Query 159248 CTTTGGGGTGGCC-GCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGA 159306
|||||| || || || ||||| | ||| | ||||| | ||||| || || |||||||
Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975
Query 159307 CACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTG 159366
| | ||||| || ||||||||||||||||| ||| | |||| | || | |||| ||
Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035
Query 159367 CTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT 159426
|||||||||| | || || |||||||| |||| || ||||| || ||||| || |
Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095
Query 159427 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCT 159486
| || ||| | ||||||||| || || |||||||| ||||| || || |||||||
Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155
Query 159487 TCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGT 159546
| ||||| || ||||| || |||| |||||||| || || ||| | |||||||||||||
Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215
Query 159547 TGTTTGTGCCTGTTATGGGTCTATGGA 159573
| ||||| || || | ||| ||||||
Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242
Score = 125 bits (138), Expect = 8e-24
Identities = 141/186 (76%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 159054 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT 159113
|| || || |||| |||||| || ||||||||||| |||| ||||| ||||||||| |
Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975
Query 159114 CGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTC 159172
|| || |||||||| || || ||| || | | ||||| || ||||| ||| | |||||
Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAATGCAATTACATTCTC 237916
Query 159173 TGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTG 159232
||| || |||||| ||||||| | ||| | || || ||||| ||||||| ||||
Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTTG 237856
Query 159233 GTTTTT 159238
||||||
Sbjct 237855 GTTTTT 237850
>seq471
Length=100806
Score = 132 bits (146), Expect = 5e-26
Identities = 200/278 (72%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 158904 TGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCAGC 158962
||||||| |||||| | || | ||||||| | | ||| ||||| ||| | || || ||
Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242
Query 158963 AGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 159022
|||||| | || ||| || | | | |||||| | || | |||||||||||| | ||
Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302
Query 159023 TCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 159082
||||| ||||| | ||| ||| | || || || |||| |||||| || |||||
Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362
Query 159083 CGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGG 159142
|||||| || | ||||| ||||||||| | | || |||||||| || || || | |
Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTG 70420
Query 159143 TA--TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 159178
|| | ||||| || ||||| ||||| |||||||| ||
Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458
>seq60
Length=520799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 159594 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 159653
|| || |||| || | |||||||| || ||||| ||| | || | |||||||||
Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517
Query 159654 GATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCT 159713
||||| |||||||| || ||||||||||| || ||||| | || || || | ||||||
Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457
Query 159714 TGG 159716
|||
Sbjct 267456 TGG 267454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545213919804480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |