Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq194 199 5e-46 seq471 129 7e-25 seq407 84.2 3e-11 >seq194 Length=269275 Score = 199 bits (220), Expect = 5e-46 Identities = 240/325 (74%), Gaps = 1/325 (0%) Strand=Plus/Plus Query 179413 TTTGGTGTTGCG-GCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGAC 179471 |||||||| || || || ||| ||||| | || || || ||||| || || || ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 179472 ACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGC 179531 | ||||| ||||| |||||||||||||| ||| | | || | ||| |||| | ||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 179532 TATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATT 179591 ||||||||| | ||||| || ||||| || | ||||||||| || ||||| ||||| Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 179592 TAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTT 179651 || || || | || |||| || || || ||||| |||||||| || ||||| || Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 179652 TTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCT 179711 |||||| || ||||| |||||| | ||| ||||| |||||||| || ||||||| | | Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 179712 GTTTGTTCCTGTCATGGGTCTTTGG 179736 ||||| || || | ||| | ||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGG 237241 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 179203 CGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 179262 || ||||| ||| || || || |||| ||| || |||||||||||||| || | ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 179263 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAA 179321 || || |||||| | ||||| |||||||| || || ||| || | | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAA 237931 Query 179322 TGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACT 179381 ||| ||| | || |||| || ||||| | || ||| || ||| | || || ||||| Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 179382 TGGACAATCCAGTTGGTTCTTTG 179404 | || || ||||||| |||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTTTG 237848 >seq471 Length=100806 Score = 129 bits (142), Expect = 7e-25 Identities = 199/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 179068 TGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGC 179126 ||||| | ||||| | || ||||||||| | | || ||| || ||| | ||||| || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186 || || | ||||||| || | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGG 179306 |||||| |||| ||||| || |||||| | |||| |||||||| || || || | | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTG 70420 Query 179307 TA--TCCGTCCTTACAATGCGATTGCTTTTACTGGTCC 179342 || | |||||||| ||||||||||| || |||| || Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq407 Length=272206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 179431 TTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATG 179490 ||| |||| | || || || ||||| || || || ||||| | || | ||||| ||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 179491 ATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTA 179550 ||||||||||| ||| | | || | ||| |||||| ||||||| |||| | | | | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 179551 GAGAATACATTGTATGAAGATGGAGA 179576 || ||||| || | ||||||||| || Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605600909724960