Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1083 127 1e-24 seq1646 113 3e-20 seq187 111 1e-19 seq139 100 2e-16 seq1470 95.1 8e-15 seq771 87.8 1e-12 seq260 82.4 5e-11 >seq1083 Length=90715 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| ||||| | ||| | ||||||||| ||| || ||||||||||| |||| Sbjct 36348 ACCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGC 36407 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||||||| ||||| || | | ||||||||| |||| Sbjct 36408 TAAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGG 36467 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | | |||||||| |||||| |||| || | ||| | |||||| ||||| Sbjct 36468 GATGCACTCTTTGTCCTGTATTTTCGATTTC-ACGTTGTCGATTGTGTCGGAGCCTTCCA 36526 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || |||| ||||| |||||||||||||| Sbjct 36527 CCTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq1646 Length=84127 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||||| ||||| ||||| |||||||| || || || ||||| |||| Sbjct 62098 ACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGC 62157 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || || || ||||||||||| || | | |||||| ||| | || Sbjct 62158 TAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 62217 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| ||||| || |||||| | | || | ||| | ||| ||| ||| | Sbjct 62218 AATACCCTCTTTATCCTGAATTTT-AGCCTTGACGTTGTCGATGGTATCGGAGCTTTCGA 62276 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || |||||||||||||| Sbjct 62277 CCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 62325 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | || | |||| || || ||| ||| ||||| || ||||| || | Sbjct 61870 ACCACCTCTGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGC 61929 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | ||||| |||||||| || | | |||||| ||| | || Sbjct 61930 TAGGGTGCGGCCGTCTTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGG 61989 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||| |||||||| |||||| || | ||| |||| |||||| |||| | Sbjct 61990 GATACCCTCTTTGTCTTGGATTTTCGCCTTGA-CATTGTCAATGGTGTCAGAGCTT---T 62045 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || || || || | || ||||||||||| |||||| Sbjct 62046 CAACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCATA 62098 >seq187 Length=363338 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||||| ||||| |||| || || || || || || ||||| || | Sbjct 22452 CCACCTCTCAAACGTAGGACCAAGTGTAAGGTACTTTCCTTCTGGATATTGTAGTCAGCT 22511 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | |||||||||||||| || | | ||||||||| | || Sbjct 22512 AGCGTACGACCGTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGGGGA 22571 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || | || ||||| ||| | ||||||| ||||| Sbjct 22572 ATCCCTTCCTTGTCCTGAATCTT-GGCTTTAACATTGTCTATGGTGTCGGAGCTCTCCAC 22630 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 22631 CTCCAAGGTGATGGTCTTTCCAGTAAGCGTCTTGACAAATATCTGCAT 22678 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||||| ||||| ||||| || ||| || || || ||||| |||| Sbjct 30118 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGGCA 30177 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | |||||||| || || || | | |||||| ||| | || Sbjct 30178 AGGGTACGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGA 30237 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||||||| | | |||| ||| | |||||| ||| ||| Sbjct 30238 ATTCCCTCCTTGTCTTGAATTTTC-GCCTTGACATTGTCGATGGTGTCAGAGCT---TTC 30293 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| || ||||| || | || || ||||||||||||||| Sbjct 30294 GACTTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATA 30345 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| ||||| || || || ||||| || || ||||||||||| | Sbjct 21995 ACCACCACGGAGACGTAGAACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGC 22054 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| ||||| ||||| || || | | ||||||||| | || Sbjct 22055 TAGGGTGCGGCCGTCCTCCAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGG 22114 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| | | || | ||| | ||||||| || | Sbjct 22115 AATTCCCTCCTTGTCTTGAATTTT-GGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAA 22173 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || ||||| || |||||||| |||||| Sbjct 22174 CCTCCAAGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATTTGCATA 22223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| | | ||||| || |||||| ||| || || |||||||| |||| Sbjct 41828 ACCACCCCTCAACCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 41887 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | |||||||||||||| || | | |||||||| | || Sbjct 41888 AAGGGTACGTCCGTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTTTGCTGATCCGGGGG 41947 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || | | || | ||| | ||||||| |||| Sbjct 41948 AATCCCTTCCTTGTCCTGAATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 42006 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || | || || || ||||||||||| Sbjct 42007 CCTCAAGGGTAATGGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 42055 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| | | |||||| || || || ||| || || ||||||||||| | Sbjct 22223 ACCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 22282 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | ||||| ||||| || || | | |||||| ||| | || Sbjct 22283 TAGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGG 22342 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || | | |||| ||| | |||||| ||| | Sbjct 22343 AATCCCTTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATGGTGTCAGAACTTTCAA 22401 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || |||||||| ||||| Sbjct 22402 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 >seq139 Length=432677 Score = 100 bits (110), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| |||||||| |||||| |||||| || |||||||| || | | || ||| | Sbjct 177660 CGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGTCCA 177719 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || ||||| ||||| || ||||| |||| | |||||| ||| | || | || || || Sbjct 177720 TCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTA 177779 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---TCCACGTCAACCGT 33710 || ||| || |||| ||| ||| ||||| ||| ||||| || | || Sbjct 177780 TCTTGAATCTTAGCCTTCA-CATTATCAATAGTGTC---TGAACTCTCCACCTCCAATGT 177835 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||| || || ||||| || |||||||| ||||| Sbjct 177836 GATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCAT 177874 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || | ||| | || || || || ||||| ||||||||||| | Sbjct 178331 ACCGCCCCTCAACCGGAGCACAAGGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAGC 178390 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| || | || || |||||||| || | | |||||||||| |||| Sbjct 178391 AAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCTGGCGG 178450 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | ||| || ||||| ||| || ||| | |||| || | ||| || | | | || Sbjct 178451 AATACCCTCCTTGTCTTGAATCTT-TGTCTTGACATTATCGATGGTATC-CGAGCTCTCA 178508 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | ||||| |||||||| ||||| Sbjct 178509 ACCTCTAGAGTAATAGTCTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 178558 >seq1470 Length=49555 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||||| ||||| || | || ||||| || || |||||||| |||| Sbjct 30843 ACCACCTCTCAAACGTAGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAGTCGGC 30784 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||||||||||| || | | |||||| ||| | || Sbjct 30783 AAGGGTACGACCATCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 30724 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||||| || | ||| | || | ||||||| || | Sbjct 30723 GATTCCCTCCTTATCTTGGATTTT-TGCCTTAACGTTATCAATGGTGTCGGAGCTCTCGA 30665 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || |||||||||||||| Sbjct 30664 CCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30616 >seq771 Length=161796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||||| ||||| ||||| ||| ||| ||||| || || || || | Sbjct 43269 ACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGGACTCCTTTTGGATATTATAGTCAGC 43210 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || ||| || | |||||||||||||| || | | |||||| ||| | || Sbjct 43209 AAGGGTACGACTGTCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 43150 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || || || | | ||| | ||| | |||||| ||| | Sbjct 43149 GATACCCTCCTTATCCTGGATCTT-GGCCTTAACGTTGTCGATGGTGTCTGAGCT---CT 43094 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || || | || || |||||||||||||| Sbjct 43093 CGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTAACAAAGATCTGCAT 43042 >seq260 Length=279698 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||||| ||||| ||||| || || || || || ||||| || |||| Sbjct 162548 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTACTTTCCTTCTGGATGTTATAGTCGGCA 162607 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||||| || || || | | ||||| ||| | || Sbjct 162608 AGGGTACGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGAGGG 162667 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT---TC 33698 | || ||||| || ||||| || | ||| | ||| | |||||| ||| || Sbjct 162668 ATTCCCTCTTTATCTTGGATTTT-TGCCTTAACGTTGTCGATGGTGTC---TGAGCTCTC 162723 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || |||||||||||||| Sbjct 162724 GACCTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 162774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328668922763520