Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq139 96.9 3e-15 seq187 89.7 5e-13 >seq139 Length=432677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||| ||| | | |||| || || |||||||||||||| ||| | ||| || ||| || Sbjct 178578 ACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCT-AGGGTTCGGCCATCCTC 178636 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | ||||||| | ||| ||||||| || ||||| ||||| || Sbjct 178637 GAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGGGATGCCCTCTTTGTCTTG 178696 Query 132034 AATTTTTTGTTTCA-ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 ||||| ||| | ||| ||| |||||||| | ||||| |||| || | || | Sbjct 178697 TATTTTGGATTTGACACT-TTCGACAGTATCAGGACTTTCCACATCGAGGGTTATAGTCT 178755 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCATGAC 132126 | || || || ||||| | || |||||||| || Sbjct 178756 TTCCGGTAAGGGTTTTGACAAATATCTGCATCAC 178789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT 131961 |||| ||| ||||||||||| | | |||||||| |||||||||||||| ||| | || Sbjct 177654 CGCAGGCGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT-AAAGT 177712 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||||||||| | | | || || | ||| || ||||| || || || Sbjct 177713 CCGTCCATCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCC 177772 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||| || |||| | || | ||| || | |||||| || | Sbjct 177773 CTCCTTATCTTGAATCTTAGCCTTCACATTATCAATAGTGTCTGAACTCTCCACCTCCAA 177832 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||| || |||| || || | || || ||||| Sbjct 177833 TGTGATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCAT 177874 >seq187 Length=363338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| | |||||| || || Sbjct 41619 ACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCGTCCTCA 41678 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||||| | |||| || | |||||||||||| || || || || ||||| | Sbjct 41679 AGCTGTTTACCGGCAAAGATGAGCCTCTGTTGATCTGGGGGAATTCCCTCCTTATCTTGA 41738 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | || |||| |||||| || | || | || || Sbjct 41739 ATTTTCGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTG 41798 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | |||||| ||||| Sbjct 41799 CCGGTGAGGGTCTTCACGAAAATTTGCAT 41827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476559034904160