Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq694 105 1e-16 seq524 104 3e-16 >seq694 Length=127158 Score = 105 bits (116), Expect = 1e-16 Identities = 211/305 (69%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||| |||||||| || | ||||| ||| ||||| || |||||||| || || Sbjct 31481 TTCATGACTGAGGTCCAGGTGGCCGAGGCCCGTGCCTTTTATGGCTTCCAGATTGCAATT 31540 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCT-GATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| || ||||| | || | ||| | | |||| || || | ||||| || Sbjct 31541 GAGAACATACATTCTGAGATGTA-TAGCTTGTTGCTCGAGACGTATATAAAGGATCCCAA 31599 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA--AAGGCC 1456131 ||||| || || |||| || | || || | |||| ||| |||| ||||| Sbjct 31600 TGAGAAACACAGGCTGTTTCATGCAGTTGAGACCATCCCGT--GTGTCGAAAGGAAGGCT 31657 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 | ||||| |||| |||||||| | ||| ||| ||||| ||| || | || | Sbjct 31658 AAGTGGGCCATGAGATGGATCAATGGTG-GGGAGTCG----TTTGCTGAGAGGATTGTTG 31712 Query 1456192 GCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| | || ||||| || |||||||| || || ||||| |||||||| ||||||| Sbjct 31713 CTTTTGCTTGTGTTGAGGGGATTTTTTTCTCTGGTAGCTTCTGTGCCATCTTCTGGCTCA 31772 Query 1456251 AGAAG 1456255 ||||| Sbjct 31773 AGAAG 31777 >seq524 Length=308948 Score = 104 bits (114), Expect = 3e-16 Identities = 212/311 (68%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||| |||||||| || | || || || || || ||||||||||| || || Sbjct 106424 TTCATGACTGAGGTCCAGGTGGCTGAAGCCCGAGCCTTCTATGGGTTCCAGATTGCTATT 106365 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || || || |||||||| | || | || |||| || ||| | || ||| | | Sbjct 106364 GAGAATATACACTCTGAGATGTATAGTTTATTGCTCGAGACTTACATAAAAGACTCTGCA 106305 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || || || | || | || ||| | || | || ||| |||||| | Sbjct 106304 GAAAAGCACAGGCTGTTCCATGCGGTGGAGACGATCCCCTGTGTTGAGAAGAAGGCCAAA 106245 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGC 1456193 ||||| |||| ||||||||| || ||| || |||| || ||| || | || | Sbjct 106244 TGGGCAATGAGGTGGATCAAT--GGTGGG----GAGTCTTTTGCTGAGAGGATTGTTGCT 106191 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| | || || || |||||||||||||| ||||| || || ||||| ||||||||| Sbjct 106190 TTTGCGTGTGTGGAAGGAATCTTTTTCTCGGGAAGTTTTTGTGCTATCTTCTGGCTCAAG 106131 Query 1456253 AAGCGCGGCCT 1456263 ||| | || || Sbjct 106130 AAGAGAGGTCT 106120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176966667706472