Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq194 230 3e-55 seq471 145 9e-30 seq60 109 6e-19 seq407 84.2 3e-11 >seq194 Length=269275 Score = 230 bits (254), Expect = 3e-55 Identities = 251/332 (76%), Gaps = 1/332 (0%) Strand=Plus/Plus Query 159847 CCTAGTTTCGGGGTAGCA-GCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAA 159905 ||||| || || |||||| || || ||| ||||| | | || |||| || || || || Sbjct 236911 CCTAGCTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAA 236970 Query 159906 CTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTT 159965 ||||| | ||||| || ||||||||||||||||| ||| || |||| | || || | Sbjct 236971 TTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCT 237030 Query 159966 GTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAA 160025 ||||| || |||||||||||||| || || || || ||||||||||| || ||||| Sbjct 237031 ATGTGCTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 237090 Query 160026 CACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAA 160085 ||||| || ||| | || ||||||| ||||| |||||||| ||||| || || || Sbjct 237091 TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAA 237150 Query 160086 CCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTT 160145 |||||| ||||| || ||||| || ||||| |||||||| || || ||| | ||||| || Sbjct 237151 CCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTT 237210 Query 160146 CATGTTGTTTGTGCCTGTTATGGGTCTATGGA 160177 ||||| ||||| || || | ||| |||||| Sbjct 237211 TATGTTATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 138 bits (152), Expect = 1e-27 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 159643 CGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTC 159702 || ||||| ||| || || | ||| | |||||||||||||||||||| || | || Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 159703 ATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAA 159761 |||||||| ||| |||| ||||||||| ||||||| ||| ||| | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTACGTCCTTATAA 237931 Query 159762 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACT 159821 ||| ||| | |||||||| || |||||| ||||||| | |||| | || |||||||| Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 159822 GGGTCAGTCTTCATGGTTCTTTG 159844 ||||||| ||||| |||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTTTG 237848 >seq471 Length=100806 Score = 145 bits (160), Expect = 9e-30 Identities = 204/279 (73%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 159508 TGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGC 159566 ||||| | || || | || |||||||| | | || ||| |||||| | ||||| || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 159567 TGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 159626 || || | ||||||| || | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 159627 TCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCA 159686 ||||| || || || ||||| ||| | || || | ||| | |||||||||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 159687 CGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTG 159745 |||||| |||| || |||||||| ||| || | ||||||||| ||||||| ||| || Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCT-GT-- 70419 Query 159746 GTA--TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 159782 ||| | |||||||| ||||| ||||| |||||||| || Sbjct 70420 GTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 109 bits (120), Expect = 6e-19 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160210 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTT 160269 ||| | |||||||| || ||||| |||| | ||| | ||||||||||||||||||||| Sbjct 267564 AACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAAGATCCTGAATTT 267505 Query 160270 GAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGA 160321 ||||| ||||||||||| || || || || || || || |||||||||||| Sbjct 267504 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGA 267453 >seq407 Length=272206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 159890 TTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 159949 |||| || || || || ||||| | || | || ||||||||||||||||| ||| || Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 159950 TAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAG 160009 |||| | || || | ||||| || ||||||||| | | || || || || ||||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 160010 ATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 |||| || |||| ||||| || ||| | || |||| || Sbjct 62033 ATGGTGATGGTACAAATACATTCCGTGCTTTTAACCCKACTCGAG 62077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572961282523200