Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq194 212 7e-50 seq471 120 3e-22 seq407 84.2 2e-11 seq60 84.2 2e-11 >seq194 Length=269275 Score = 212 bits (234), Expect = 7e-50 Identities = 244/327 (75%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 162161 CTTTGGGGTGGCA-GCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGA 162219 |||||| || ||| || || ||| ||||| | | ||| |||||||||| ||||| |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 162220 CCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTG 162279 | ||||||| || ||||||||||||||||| ||| || |||| | || | |||| || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 162280 CTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT 162339 ||||||| || | || || |||||||| |||| || ||||| || ||||| || | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 162340 TTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 162399 | || ||| | | || || | ||||| |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 162400 TCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 162459 | ||||| || ||||| || |||| |||||||| || || ||| | ||||| || |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 162460 TGTTTGTGCCTGTTATGGGTCTATGGA 162486 | ||||| || || | ||| |||||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 >seq471 Length=100806 Score = 120 bits (132), Expect = 3e-22 Identities = 198/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 161817 TGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTC 161875 ||||||| ||||| | || ||||||||| | | ||| ||||| ||| | || || | Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 161876 AGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGG 161934 |||| | || ||| | | | | |||||| || || || |||||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTCTGGGGTCCTAAAG 70301 Query 161935 CTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCC 161994 | ||||| ||||| || ||| ||| | || || || |||| |||||| || |||| Sbjct 70302 CACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCC 70361 Query 161995 ATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTTATT 162053 | ||||| |||| ||||| || |||||| | |||| |||||||| || || ||| | Sbjct 70362 ACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGT 70421 Query 162054 GGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 162091 | | ||||| || ||||| ||||| |||||||| || Sbjct 70422 AAT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq407 Length=272206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 162195 TTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGT 162254 ||| |||||||||| ||||| ||||| |||| | || ||||||||||||||||| ||| Sbjct 61909 TTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGT 61968 Query 162255 ATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATAC 162314 || |||| | || | || | ||||||| | || | | | |||||||| |||| Sbjct 61969 GTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTT 62028 Query 162315 GAGGATGGAGA 162325 || ||||| || Sbjct 62029 GAAGATGGTGA 62039 >seq60 Length=520799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 162507 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 162566 || || |||| ||| | |||||||| || ||||| |||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 162567 GATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCA 162626 |||||||| ||||| || |||||||| || || ||||| | || || || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 162627 TGG 162629 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559442762287200