Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq194 188 9e-43 seq471 132 6e-26 >seq194 Length=269275 Score = 188 bits (208), Expect = 9e-43 Identities = 238/326 (73%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 182834 CTTTGGTGTCGCG-GCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGA 182892 ||||||||| || || || || | ||| | | || |||| || || || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 182893 CACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTG 182952 | | ||||| || ||||||||||||||||| ||| || | || | || |||| ||| Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 182953 CTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACAT 183012 |||| ||||||| || || || ||||| || | ||||||||| || ||||| |||| Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 183013 TTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTT 183072 | || || | | ||||| | || || || ||||| |||||||| || || || | Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 183073 TTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGT 183132 ||||||| |||||||| |||||||| ||| ||||| |||||||| || |||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 183133 TGTTTGTTCCTGTCATGGGTCTTTGG 183158 | ||||| || || | ||| | ||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGG 237241 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 182625 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 182684 || ||||| ||| || || || |||| ||| || |||||||||||||| || | || Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 182685 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAA 182743 || ||||||||| | | ||||||||||||||||| ||| || | | | ||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTACGTCCTTATAA 237931 Query 182744 TGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTT 182803 ||| ||| | || ||||| || |||||| | || || || ||| | || ||||| | Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 182804 GGGACAGTCCTCTTGGTTTTT 182824 | ||||| ||||||||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 132 bits (146), Expect = 6e-26 Identities = 186/255 (73%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 182513 TTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTA 182571 ||||||| | | || ||| || ||| | ||||| || || || | ||||||| || | Sbjct 70207 TTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGCAGTTTCTATGCCTGCTAATAGTT 70265 Query 182572 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGT 182631 | | |||||| | | |||| ||||||||| | | || || |||| || |||| Sbjct 70266 TAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGCACAAGGAGATTTTACTCGTTGGT 70325 Query 182632 GCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTT 182691 | ||| | || || || |||| ||| || |||||||||||||| |||| || || |||| Sbjct 70326 GTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTT 70385 Query 182692 TCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCA-GACCTTACAATGCGAT 182749 ||||| | | ||||||||||||||||| ||| || ||| | | ||||| |||||||| Sbjct 70386 TCATGTTATGTCAATTTGAACTTGCTCGATCTG--TGTAATTACGTCCTTATAATGCGAT 70443 Query 182750 TGCTTTTTCTGGTCC 182764 ||| || ||||| || Sbjct 70444 TGCATTCTCTGGCCC 70458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614550330103680