Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq194 215 7e-51 seq232 114 2e-20 seq471 102 1e-16 seq116 102 1e-16 >seq194 Length=269275 Score = 215 bits (238), Expect = 7e-51 Identities = 244/326 (75%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 176324 CTTTGGTGTGGCA-GCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGA 176382 ||||||||| ||| || || ||| ||||| | | ||| |||| || || || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 176383 CACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTG 176442 | ||||||| || ||||||||||||||||| ||| || |||| | || | |||| || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 176443 CAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCT 176502 | || ||||| | |||||| |||||||| ||| ||||||||| || || || | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 176503 TCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCT 176562 || ||| || | | || || | ||||| || ||||| |||||||| || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 176563 TCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGT 176622 | ||||| |||||||| |||||||| ||| |||||| |||||| | || |||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 176623 TGTTTGTCCCTGTCATGGGTCTTTGG 176648 | ||||| || || | ||| | ||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGG 237241 >seq232 Length=163650 Score = 114 bits (126), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 161474 GGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATT 161533 || || || ||||| |||||||| ||||| || ||||||| || || ||||||||||| Sbjct 146841 GGCATCCTGTTCAATCATGAGTCGCCACGTCGTGGTGAGAACTTTGTGACCCGTAAGATC 146782 Query 161534 ACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTA 161593 || | | | | || || | | ||| |||||| |||| ||| || || || Sbjct 146781 ACCCGTGCAGTTGGTCGGATCAAGATAGGCCTACAGAGCAAGCTATTCCTTGGGAACTTA 146722 Query 161594 AA---CTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATG 161650 | ||||| |||| |||||| || | ||||||||| ||||| |||||| ||||| Sbjct 146721 CAGGCCTCAA---GAGACTGGGGTTTCGCCGGAGACTATGTTGAGGCCATGTGGATGATG 146665 Query 161651 TTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGT---ATTCAGTG 161707 | |||||||||| || ||||| |||||| | ||||| | | |||| || | || Sbjct 146664 CTCCAACAGGAAAAGCCCGATGATTATGTGGTCGCCAC---TGAGGAGTCCCATACTGTT 146608 Query 161708 AAGGACTTTGTAGAGGC 161724 |||| ||| ||||||| Sbjct 146607 CAGGAATTTCTAGAGGC 146591 >seq471 Length=100806 Score = 102 bits (112), Expect = 1e-16 Identities = 192/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 175980 TGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGC 176038 ||||| | ||||| | || ||||||| | | ||| ||| || ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 176039 TGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATC 176098 || || | |||||| || | | | |||||| | | |||| ||||||||| || | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 176099 TCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCA 176158 || || || || || ||| ||| | || || || ||| | |||||||||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 176159 CGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGG 176218 |||||| |||| || || || |||||| | |||| |||||||| || || || || Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGA-TCTGTGT 70421 Query 176219 TA-TCCGTCCCTACAACGCTATTGCATTCAGTGGTCC 176254 | | ||||| || || || ||||||||| ||| || Sbjct 70422 AATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 102 bits (112), Expect = 1e-16 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 174619 TAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAA 174678 ||||||| || || | || ||||| || || || || | || || || |||||| Sbjct 22677 TAGCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTG 22736 Query 174679 ACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTC----GACGAATGG 174734 || || ||| | ||||| |||||||| |||||||| | | || || |||||| Sbjct 22737 CAGCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGG 22796 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 | |||| |||||||||| ||||| |||| | |||||| | ||||| | Sbjct 22797 TTACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 22856 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 || ||||| |||||||||||||| || ||||| |||||| ||||||||| ||| Sbjct 22857 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTT 22916 Query 174855 GCAT 174858 |||| Sbjct 22917 GCAT 22920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729849709205280