Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq194 203 4e-47 seq471 138 1e-27 seq116 89.7 6e-13 seq60 89.7 6e-13 seq407 86.0 8e-12 >seq194 Length=269275 Score = 203 bits (224), Expect = 4e-47 Identities = 242/327 (74%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 179696 CTTTGGTGTCGCG-GCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGA 179754 ||||||||| || || || || | ||| | || || |||| || || || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 179755 CGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTG 179814 || | ||||| || ||||||||||||||||| ||| || |||| | || |||| ||| Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 179815 CTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCT 179874 |||| ||||| | |||||| || ||||| || | ||||||||| || |||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 179875 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 179934 | || ||| | | || || | ||||| |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 179935 TCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 179994 | ||||| || ||||| || |||| |||||||| || || ||| | ||||| || |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 179995 TGTTTGTGCCTGTTATGGGTCTATGGA 180021 | ||||| || || | ||| |||||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 179487 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 179546 || ||||| ||| || || || |||| ||| || |||||||||||||| || | || Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 179547 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACAA 179605 || ||||||||| | | ||||||||||||||||| ||| || | | ||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTACGTCCTTATAA 237931 Query 179606 TGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTT 179665 ||| ||| | || ||||| || |||||| | || || || ||| | || ||||| | Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 179666 GGGACAGTCCTCTTGGTTTTT 179686 | ||||| ||||||||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 138 bits (152), Expect = 1e-27 Identities = 201/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 179352 TGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGC 179410 ||||| | || || | || ||||||||| | | ||| ||| || ||| | ||||| || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || | ||||||| || | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || || |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTG 179589 |||||| |||| || || ||||||||| | | ||||||||||||||||| ||| || Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTG--TG 70420 Query 179590 GTATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCC 179626 || | | ||||| ||||||||||| || ||||| || Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 178062 GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC--CG--CATCACTTGATGAGTGGCT 178117 || |||||| | ||||| || || || |||||||| || | || ||||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 178118 GTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATA 178177 | || |||||||||| |||| | || | |||||| | ||||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 178178 CATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGC 178237 |||||| ||||||||||||||| | |||||| ||||||| || ||||| ||| || Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Query 178238 AT 178239 || Sbjct 22919 AT 22920 >seq60 Length=520799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 180042 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAA 180101 || || |||| ||| | |||||||| || ||||| |||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 180102 GATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCA 180161 ||||| || |||||||| ||||||||||| || ||||| | || || || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 180162 TGG 180164 ||| Sbjct 267456 TGG 267454 >seq407 Length=272206 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 179734 TTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 179793 |||| || || || || |||||| | || | || ||||||||||||||||| ||| || Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 179794 TAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAG 179853 |||| | || ||||| ||||||| |||| | || | | || ||||| || | ||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 179854 ATGGAGA 179860 |||| || Sbjct 62033 ATGGTGA 62039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605943272249280