Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq194 203 4e-47 seq471 123 3e-23 seq407 86.0 7e-12 seq60 84.2 2e-11 >seq194 Length=269275 Score = 203 bits (224), Expect = 4e-47 Identities = 242/327 (74%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 160372 CTTTGGGGTGGCA-GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGA 160430 |||||| || ||| || || ||| ||||| | | || ||||||||||||| || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 160431 CGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTG 160490 || | ||||| || ||||||||||||||||| ||| || |||| | || |||| ||| Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 160491 CCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCT 160550 | || ||||| | |||||| || || || | | ||||||||| || |||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 160551 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 160610 | || ||| | | || || | ||||| |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 160611 TCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 160670 | ||||| || ||||| || |||| |||||||| || || ||| | ||||| || |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 160671 TGTTTGTGCCTGTTATGGGTCTTTGGA 160697 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 >seq471 Length=100806 Score = 123 bits (136), Expect = 3e-23 Identities = 200/279 (72%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 160028 TGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTC 160086 ||||||| |||||| | || ||||||||| | | ||| ||||| ||| | || || | Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 160087 AGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGG 160145 |||| | || ||| | | | | |||||| || || || |||||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTCTGGGGTCCTAAAG 70301 Query 160146 CTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCC 160205 | ||||| ||||| | ||| ||| | || || || |||| |||||| || |||| Sbjct 70302 CACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCC 70361 Query 160206 ATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCG 160265 | ||||| |||| ||||| || |||||| | |||| |||||||| || || || | Sbjct 70362 ACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGT 70419 Query 160266 GTA--TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 160302 ||| | |||||||| ||||| ||||| |||||||| || Sbjct 70420 GTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq407 Length=272206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 160410 TTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 160469 ||||||||||||| || |||||| | || | || ||||||||||||||||| ||| || Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 160470 TAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAG 160529 |||| | || ||||| |||| || |||| | || | | || || || | | ||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 160530 ATGGAGA 160536 |||| || Sbjct 62033 ATGGTGA 62039 >seq60 Length=520799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 || || |||| || | |||||||| || ||||| ||| | ||| | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 ||||| ||||||||||| ||||||||||| || || || | || || || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 160838 TGG 160840 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552413131764480