Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq194 206 3e-48 seq471 120 4e-22 seq60 84.2 3e-11 >seq194 Length=269275 Score = 206 bits (228), Expect = 3e-48 Identities = 242/326 (74%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 180495 TTTGGGGTAGCA-GCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGAC 180553 ||||| |||||| || || ||| ||||| | |||||| |||| || || || || ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 180554 CCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGC 180613 | ||||| || ||||||||||||||||| ||| || |||| | || ||||||| || Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 180614 AATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTT 180673 || ||||| | ||||| || || || | | ||||||||| || ||||| || || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 180674 TAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTT 180733 || ||| | |||| |||| || |||||||| || ||||| || || |||||||| Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 180734 CTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 180793 ||||| || ||||| || |||| |||||||| || || ||| | ||||| || ||||| Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 180794 GTTTGTGCCTGTTATGGGTCTATGGA 180819 ||||| || || | ||| |||||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 180285 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 180344 || ||||| ||| || || || |||| ||| || |||||||||||||| || | ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 180345 ATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAAT 180404 || || || ||| |||| || |||||||| || || | || | |||||||| ||| Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTACGTCCTTATAAT 237930 Query 180405 GCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTG 180464 || ||| |||||||||| || || ||| | ||||| | ||| | || || ||||| Sbjct 237929 GCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTA 237870 Query 180465 GGTCAGTCCAGTTGGTTCTTTG 180486 ||||||| ||||||| |||| Sbjct 237869 AGTCAGTCGGGTTGGTTTTTTG 237848 >seq471 Length=100806 Score = 120 bits (132), Expect = 4e-22 Identities = 182/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 180173 TTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTA 180231 ||||||| | | || ||| || ||| | ||||| || || || | ||||||| | | Sbjct 70207 TTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGCAGTTTCTATGCCTGCTAATAGTT 70265 Query 180232 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGT 180291 | | |||||| | | |||| ||||||||| | | || || |||| || |||| Sbjct 70266 TAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGCACAAGGAGATTTTACTCGTTGGT 70325 Query 180292 GCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGAT 180351 | ||| | || || || |||| ||| || |||||||||||||| |||| ||||| || | Sbjct 70326 GTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTT 70385 Query 180352 TTATGCTACGCCAGTTTGAACTGGCACG-TCTTATTGGTATCCGTCCTTACAATGCTATT 180410 | ||| || | || |||||||| || || ||| | | | |||||||| ||||| ||| Sbjct 70386 TCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTAAT-TACGTCCTTATAATGCGATT 70444 Query 180411 GCATTCTCTGGTCC 180424 ||||||||||| || Sbjct 70445 GCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 180840 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 180899 || || |||| ||| | |||||||| || ||||| ||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 180900 GATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCA 180959 |||||||| || ||||| ||||||||||| || || || || || || || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 180960 TGG 180962 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610262799425280