Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1254 122 1e-22 seq928 107 3e-18 seq694 86.0 9e-12 >seq1254 Length=70693 Score = 122 bits (134), Expect = 1e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||||| ||| | || | || ||| ||||| |||||| Sbjct 37259 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACCA 37200 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||| ||| | || || ||||| || ||| Sbjct 37199 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGAT 37140 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || || ||| | ||||| |||||| || ||||| || Sbjct 37139 ACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAATT 37080 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| |||| | || |||||||| Sbjct 37079 CCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039 >seq928 Length=80382 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | || |||| |||| | |||| |||||| |||| ||| ||| Sbjct 50765 CCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAACAATGCCA 50824 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| |||||| || || | || || |||||| || |||| Sbjct 50825 TTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATGAACAGAT 50884 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||||||||| || || || || | |||||| |||||| ||||| || Sbjct 50885 ACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATCATAAATT 50944 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || |||||||| ||||| Sbjct 50945 CCTTCAATACTATCATCCTTCATG 50968 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||||||||| ||||| ||||| ||||| |||||| | | ||| | | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||| |||||||| || ||||| | |||||||| | | || | ||| ||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || || | ||| || ||| |||| ||||| || || || |||| || Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 51888 GTTTTAAAACCAAAGTA 51904 >seq694 Length=127158 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| ||||| || ||||| | |||||| || ||||||||||| || | ||| ||| Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619 Query 39385 TTCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttA-AATCCTAATTCTGA 39441 ||||| ||||||||||||| ||| |||| || |||||| | | || || ||| Sbjct 32618 CTCCATCCAATCAAACGGATT--TTGCACATTGTACATTTTTTCATACCCCAAAGCCTGC 32561 Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCC 39498 || | |||||| || ||||| || ||||| |||||| |||| ||||||||| Sbjct 32560 AA-AAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCC 32505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686833617831840