Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1646 109 5e-19 seq139 107 2e-18 seq187 98.7 8e-16 seq1083 95.1 1e-14 >seq1646 Length=84127 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| ||||||||||| ||| | | |||| ||||||||||||||||||| Sbjct 61901 GTGGACTCCTTTTGGATATTGTAGTCAGCT-AGGGTGCGGCCGTCTTCGAGCTGTTTACC 61959 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || || || | ||||||||| || ||| || || Sbjct 61960 GGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTCGCCTT 62019 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||||||||| | || || | || || || ||||| Sbjct 62020 GACATTGTCAATGGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTCTTTCCGGTGAGAGT 62079 Query 27230 TTTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 62080 CTTTACAAAGATTTGCATA 62098 >seq139 Length=432677 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||| || | | |||| |||| |||||||| || ||| Sbjct 178362 GTAGATTCCTTTTGAATGTTGTAATCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTCCCG 178421 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| ||||| ||||| | |||||| || || ||||| | || Sbjct 178422 GCAAAGATGAGCCTCTGCTGATCTGGCGGAATACCCTCCTTGTCTTGAATCTTTGTCTTG 178481 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | | ||||| |||||||| |||| || || || || ||| Sbjct 178482 ACATTATCGATGGTATCCGAGCTCTCAACCTCTAGAGTAATAGTCTTTCCAGTGAGGGTT 178541 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 178542 TTCACAAAGATTTGCAT 178558 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| |||| || || |||||||| | || || ||||| ||||| |||||||| ||| Sbjct 177648 CCTCCCCGCAGGCGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 177707 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | ||||| | ||||||||| || | || || | ||| || || || || Sbjct 177708 AAAGTC-CGTCCATCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGTGG 177766 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | || | |||||||| || || Sbjct 177767 GATCCCCTCCTTATCTTGAATCTTAGCCTTCACATTATCAATAGTGTCTGAACTCTCCAC 177826 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| ||||||| || || |||||||||||||| Sbjct 177827 CTCCAATGTGATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCAT 177874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| ||||| || || || || ||||| || ||||| | Sbjct 178104 CCACCGCGTAGACGGAGAACCAAGTGTAAAGTCGACTCCTTCTGAATGTTATAGTCTG-C 178162 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || |||| | ||||| ||||| || ||||| | || || | ||| ||||| || || Sbjct 178163 AAGTGTGCGACCATCTTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGG 178222 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||||||| |||||| || | | | || | || || | | ||||| Sbjct 178223 AATACCCTCTTTATCCTGGATCTTCGCCTTTACGTTGTCGATTGTATCAGAGCTCTCAAC 178282 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || |||| || || |||||||| |||||| Sbjct 178283 CTCAAGTGTAATGGTTTTACCGGTCAAGGTCTTAACAAAGATCTGCATA 178331 >seq187 Length=363338 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || ||||||||||| | | | || | || ||| Sbjct 22698 ACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTACGACCATCCTCG 22757 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | ||||| | ||| || || || || | ||||| ||||| Sbjct 22758 AGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCCTGA 22817 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | ||||| | | ||| || || ||||| || | ||| Sbjct 22818 ATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCAAGAGTGATGGTCTTG 22877 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||| ||||| Sbjct 22878 CCAGTAAGAGTCTTCACAAAGATCTGCAT 22906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| |||| ||||| || || || |||||||||||| Sbjct 30116 TGCCACCTCTCAAACGTAGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGG 30175 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| ||||||||||| || ||| | ||||| | ||| || || || | Sbjct 30176 CAAGGGTACGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGG 30235 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || || || || | | || | ||||| | | ||| | Sbjct 30236 GAATTCCCTCCTTGTCTTGAATTTTCGCCTTGACATTGTCGATGGTGTCAGAGCTTTCGA 30295 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || || | || || || || || ||||||||||| |||||| Sbjct 30296 CTTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATA 30345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | ||| || || || || ||||| || ||| | | |||| |||| || Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCT-AGGGTGCGGCCGTCCTC 22072 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||||||||| | ||||| | ||| |||||||| || | ||||| || || Sbjct 22073 CAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTG 22132 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| || | | | |||| ||||| | | ||||| || | || || | || Sbjct 22133 AATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTT 22192 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| |||| || || ||||||||||||||| Sbjct 22193 GCCGGTCAACGTCTTGACAAAGATTTGCATA 22223 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || ||||||||||| ||| | | |||| |||| |||||||||||||| Sbjct 42315 GTGGACTCCTTCTGTATATTGTAGTCAGCT-AGGGTGCGACCGTCCTCGAGCTGTTTACC 42373 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || || || | ||||| ||||| ||| ||| || Sbjct 42374 GGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGCCTT 42433 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || ||||| || | ||||| || || || Sbjct 42434 GACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGTGT 42493 Query 27230 TTTCACAAAGATTTGCAT 27247 || || || |||||||| Sbjct 42494 CTTGACGAATATTTGCAT 42511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| | ||||| || | ||||| || || || || ||||| || ||| Sbjct 22224 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 22283 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || |||| || ||||||||||||||| | ||||| | ||| || || || || Sbjct 22284 -AGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGG 22342 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| || | | || | ||||| | |||||| Sbjct 22343 AATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAAC 22402 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || ||||| || |||||||||||||| Sbjct 22403 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || ||||||||| | | | || |||| || Sbjct 41619 ACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCGTCCTCA 41678 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||||||||| | ||||| | ||||||||| || || | ||||| ||||| Sbjct 41679 AGCTGTTTACCGGCAAAGATGAGCCTCTGTTGATCTGGGGGAATTCCCTCCTTATCTTGA 41738 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | | | || | ||||| | | || || || | || || | ||| Sbjct 41739 ATTTTCGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTG 41798 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||| || ||||||||| Sbjct 41799 CCGGTGAGGGTCTTCACGAAAATTTGCATA 41828 >seq1083 Length=90715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | || | ||| | |||||| || |||||||| | || || Sbjct 36120 CCACCACGTAAACGAAGCACAAGATGAAGCGTAGACTCCTTTTGAATGGTATAATCTGCG 36179 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCT-GTTGATCCGGCGG 27139 | | || | || |||||||||||||| || | || || | | ||||||| ||||| Sbjct 36180 AGAGTACGACCATCCTCGAGCTGTTTACCCGCAAAGATAAGCCTTTTGTTGATCTGGCGG 36239 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || | |||||| ||||| | |||| | | || | ||||| | | ||| || Sbjct 36240 GATCCCTTTTTTATCCTGTATCTTCGTCTTCACGTTATCAATTGTGTCAGAGTTTTCGAC 36299 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | |||||| || || ||||||||||||||||||||| Sbjct 36300 CTCAAGAGTAATGGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCATA 36348 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCT 27102 ||||| ||||| || || || || ||||||||| || | || ||| | || ||||| | Sbjct 36372 ATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCTAAAGT-GCGACCATCCTCGAGTT 36430 Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162 |||| || || | ||||| | || ||||| ||||| | | |||||| || || | Sbjct 36431 GTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGGATGCACTCTTTGTCCTGTATTT 36490 Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222 | ||||| | | || | ||||| | | |||| || || || || || | ||| || | Sbjct 36491 TCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCACCTCGAGGGTGATGGTTTTTCCGG 36550 Query 27223 TCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||||||||||||| ||||| Sbjct 36551 TTAGGGTTTTCACAAAGATCTGCAT 36575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424889053656672