Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1305 120 4e-22 seq1254 109 7e-19 seq132 100 4e-16 >seq1305 Length=68372 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| || ||||| || | || ||| || | || || Sbjct 45395 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAACGCCTGTGTTTCCTTCGAAA 45454 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || ||||| || || | | ||| |||| || |||||||||||||||||| || | | Sbjct 45455 CCGTCCATTTCAGTTAAGAGTTGGTTAAGAGTCTGTTCTCTCTCATCATTTCCT--CCTC 45512 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | ||||| | || || ||||| || ||||||| || |||||||||| Sbjct 45513 CAATTCCAGTTCCTCGTTGTCTTCCAACAGCATCGATTTCATCAACAAATACAATACATG 45572 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || || ||| ||| || || ||||| | ||||| |||||||||| Sbjct 45573 GAGCATTCTCCTTTGCTTTTTTAAAAAGGTCACGAACTCGAGAAGCACCGACACCAACAA 45632 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | ||||| || || || ||| | |||||| || | Sbjct 45633 ACATCTCAACAAACTCCGAACCAGAGATAGAGAAAAAAGGAACACCAGCTTCACCAGCAA 45692 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || | ||| |||||||| || ||||| Sbjct 45693 TCGCCTTTGCCAAGAGAGTCTTTCCGGTTCCTGG 45726 >seq1254 Length=70693 Score = 109 bits (120), Expect = 7e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || || ||||| |||||||||||||| || |||| ||||||| ||||| |||| || Sbjct 36365 TGAGGCCTAGGTGTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACC-ACCTCTG 36307 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | ||| || | |||||||||||||| || || || || || | || Sbjct 36306 GGACATGAGATGGTACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGC 36247 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 || | ||| ||||||| ||||| | |||| | | || | || || || | Sbjct 36246 AACTCTCATCAACATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGA--TTTTCAACAAG 36189 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||||||||||||| ||||||||| || ||||| ||||||| Sbjct 36188 TAAGACCTCTCAAGGGTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCG 36139 >seq132 Length=337084 Score = 100 bits (110), Expect = 4e-16 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | |||||||| || ||||| || | || || || | ||||| Sbjct 93201 TCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATGATACCGGTGTTTCCTTCAAAA 93260 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || ||||| || || | | ||| |||| ||| || || || ||||| ||| || | | Sbjct 93261 CCGTCCATTTCAGTCAAAAGTTGGTTAAGTGTCTGCTCCCTTTCATCGTTTCCT--CCTC 93318 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | | | | || || || ||||| || |||| || |||||||||| Sbjct 93319 CAATCCCAGTTCCTCTTGACCTCCCAACAGCGTCAATTTCGTCAACAAACACAATACATG 93378 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 || || || || ||| ||| ||||| ||||| || ||||| |||||||||| Sbjct 93379 GTGCGTTCTCCTTAGCCTTTTTAAAAAGATCACGAACTCTAGAAGCACCAACACCAACAA 93438 Query 11721 ACATCTCCACAAA 11733 ||||||| ||||| Sbjct 93439 ACATCTCAACAAA 93451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627963261897600