Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq524 86.0 8e-12 seq1254 82.4 9e-11 >seq524 Length=308948 Score = 86.0 bits (94), Expect = 8e-12 Identities = 144/207 (70%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| | |||||| | |||||| || |||||||| || ||||| ||||| || ||| Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCCGAGAAAAAGATTCCTTCC 106179 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTT 130200 |||||||| || |||| | | ||||||||| || | || || | |||| | Sbjct 106180 ACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCAC----CATTGATCCACCT 106235 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 ||| ||||| | ||||| ||||| | ||| |||| |||| | ||| | || || Sbjct 106236 CATTGCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGCCT 106295 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTA 130287 | |||||||| | ||||| ||||| Sbjct 106296 GTGCTTTTCTGCAGAGTCTTTTATGTA 106322 >seq1254 Length=70693 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 119409 GACAT--TTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA 119466 ||||| ||||||||| ||||| ||||| ||||||||||| |||| ||||| ||||| Sbjct 36373 GACATACTTGAGGCCTAGGTGTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAAC- 36315 Query 119467 TACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 119525 |||| |||||||| | ||| || | ||||| | ||| || || || || Sbjct 36314 CACCTCTGGGACATGAGATGGTACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATC 36255 Query 119526 CCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTC 119585 || | | || | ||| ||||||| ||| ||| | |||| | | || | || || Sbjct 36254 CCAACAGCAACTCTCATCAACATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTC 36195 Query 119586 TGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCG 119641 | |||| | |||| | ||| |||| |||||| ||| || |||| ||||||| Sbjct 36194 AACAAGTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCG 36139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618367512267360