Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq132 125 8e-24 seq1305 107 2e-18 seq1254 95.1 1e-14 >seq132 Length=337084 Score = 125 bits (138), Expect = 8e-24 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| ||||| | ||||| || || || || |||| ||||| |||||| || ||| Sbjct 93201 TCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATGATACCGGTGTTTCCTT--CAA 93258 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||| ||||| || |||||||||||||||| || || |||| |||||| || || | Sbjct 93259 AACCGTCCATTTCAGTCAAAAGTTGGTTAAGTGTCTGCTCCCTTTCATCGTTTCCT--CC 93316 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | | | | || || || ||||| || |||| || || || || Sbjct 93317 TCCAATCCCAGTTCCTCTTGACCTCCCAACAGCGTCAATTTCGTCAACAAACACAATACA 93376 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 |||| || || ||| || ||| ||||| || || | || || |||||||| Sbjct 93377 TGGTGCGTTCTCCTTAGCCTTTTTAAAAAGATCACGAACTCTAGAAGCACCAACACCAAC 93436 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | || | ||| || | || ||| || ||| || ||| || | Sbjct 93437 AAACATCTCAACAAACTCTGAACCAGAA-ATGGAGAAGAACGGCACACCAGCTTCTCCTG 93495 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| || || | ||||||||| || || ||||| Sbjct 93496 CAATTGCCTTTGCCAAAAGAGTCTTCCCAGTTCCTGG 93532 >seq1305 Length=68372 Score = 107 bits (118), Expect = 2e-18 Identities = 230/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9614 ||||| ||||| | || || || || || || |||| || ||||| ||| || | | Sbjct 45395 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAACGCCTGTGTTTCCTT--CGA 45452 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||| ||||| || || || |||||||||| ||| ||||| | |||||||| || | Sbjct 45453 AACCGTCCATTTCAGTTAAGAGTTGGTTAAGAGTCTGTTCTCTCTCATCATTTCCT--CC 45510 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | ||||| |||| || ||||| || ||||||| || || || || Sbjct 45511 TCCAATTCCAGTTCCTCGTTGTCTTCCAACAGCATCGATTTCATCAACAAATACAATACA 45570 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 ||| ||| || || || ||| || || || || || || || |||||||| Sbjct 45571 TGGAGCATTCTCCTTTGCTTTTTTAAAAAGGTCACGAACTCGAGAAGCACCGACACCAAC 45630 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 45631 AAACATCTCAACAAACTCCGAACCAG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 45689 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| || || | |||||||| || || ||||| Sbjct 45690 CAATCGCCTTTGCCAAGAGAGTCTTTCCGGTTCCTGG 45726 >seq1254 Length=70693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| | ||||| ||||||| ||| | || || | || || ||| || || |||| Sbjct 36215 TGGAGAGACCACAACACATGTTGATGAGAGTTGCTGTTGGGATACATAAAGAGGATATTG 36274 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 104332 |||||||||| | || ||| | |||||||| |||| ||||| ||||||| |||| Sbjct 36275 ATTCTGTCTTAAAAACGTACCATCTCATGTCCCAGAGGT-GGTTCACTCACGCATCACCG 36333 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAA--ATGTCCAGTTGCT 104378 || |||||||||||||| ||||| || || ||| ||||| ||| || Sbjct 36334 ACTCTCTTCAATGCTGGGACACCTAGGCCTCAAGTATGTCACGTTTCT 36381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583196962105440