Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq2930 351 1e-91 seq466 161 1e-34 seq194 132 6e-26 seq449 84.2 3e-11 >seq2930 Length=3307 Score = 351 bits (388), Expect = 1e-91 Identities = 898/1368 (66%), Gaps = 102/1368 (7%) Strand=Plus/Minus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATGCTCATGATT 182906 |||| ||||| ||| | || ||||| ||||| ||||| |||| || |||||||| |||| Sbjct 2116 TAGCTAAAGGTCCTGAGACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATT 2057 Query 182907 TTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTG 182966 | |||| ||| | ||||| || | |||| ||| ||||| ||||| ||| || |||| Sbjct 2056 TCGATAGCCATACCGGTGATTTGGAGGAGATTTCTCGAAAAGTATTTAGTGCCCATTTTG 1997 Query 182967 CTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTT 183026 || || ||||||||| | ||| |||| | | || || |||||| | |||| Sbjct 1996 GGCAACTCTCCATCATCTTTCTTTGGTTGAGTGGCAAGTATTTCCATGGTGCTCGTTTTT 1937 Query 183027 CAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTT 183086 | |||||| | |||||| || || || ||||| | | |||| |||||||||| Sbjct 1936 CCAACTATGAGGCATGGTTAGC-GATCCTACTCACATTGGGCTAAGTGCCCAAGTGGTTT 1878 Query 183087 GGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTA 183146 |||| ||| | |||||||| || |||||||| || ||| | || | | ||| || Sbjct 1877 GGCCAATAGTGGGTCAAGAAATCTTGAATGGTGA-GTGGGCGGTGGTTTCCGAGGAATAC 1819 Query 183147 GAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAAC 183206 ||| || |||||||| |||||||| ||| |||||| || ||||| | |||| |||| Sbjct 1818 AAATAACCTCTGGTTTTTTTCAGATTTGGCGAGCATCTGGAATAACTAGTGAATTACAAC 1759 Query 183207 T-AATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCA 183265 | || | | ||| | ||||| ||| | | ||||| | ||| || ||| ||| Sbjct 1758 TCTATTGTAC-CGCAATTGGTGCATTAATCTTTGCAGCGTTAATGCTTTTTGCCGGTTGG 1700 Query 183266 TTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATG 183325 || |||| ||| ||||| || || || | |||||||| |||| ||||||||| || Sbjct 1699 TTCCATTATCATAAAGCTGCCCCAAAATTGGCTTGGTTTCAAGATGTGGAATCTATGTTG 1640 Query 183326 AATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACATTTAATT 183385 || || || | || || || || || ||||| ||| | |||||||| ||| | | Sbjct 1639 AACCACCATTTAGC-GGGTTACTAGGACTTGGATCTCTTTCTTGGGCAGGCCATCAAGTA 1581 Query 183386 CATATTTCAATCCCAACTAATATGTTGATGGATGCCATAGATGCTGGCACACCAATGGTA 183445 ||| | || | || | || |||||| | Sbjct 1580 CATGTATCTTTACCGATTA-------------------------------ACCAAT--TT 1554 Query 183446 TTAAATGGTAGATTGATAGAGACACTAACTGATATACCACCACCTCATG---TTCTCTGT 183502 ||||||| | || | ||| |||| || ||||||| ||||||| || ||| Sbjct 1553 TTAAATGCTGGAGT-----AGATCCTAA-AGAGATACCACTTCCTCATGAATTTATCTTG 1500 Query 183503 AGTCCTAGTGTTGCAGGTCAAATATTACCTGGTTTAAGTAGTGGAGTATCTAACTTCTTC 183562 | || | || | |||| | | || |||| | |||| | | |||||| Sbjct 1499 AATCGGGATCTTTTGGCTCAACTTTATCCAAGTTTTGCTGAGGGAGCAACCCCATTCTTC 1440 Query 183563 TCACTCAACTGGATGGCATTTACAGATTTCCTCACCTTTAAAGGTGGTTTGAATCCTGTA 183622 | | || ||| || | | || || || || ||| || || || |||| ||| Sbjct 1439 ACCTTGAATTGGTCAAAATATGCGGACTTTCTTACTTTTCGTGGAGGATTAGATCCAGTA 1380 Query 183623 ACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGTTT 183682 ||||| |||| ||| |||| ||||| ||||| ||||| |||| || ||| || | || Sbjct 1379 ACTGGGGGTCTATGGTTGACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTC 1320 Query 183683 ATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATA 183742 | | || ||||| |||||| | || ||||||||||||||||| | |||||||| Sbjct 1319 CTGGTAGCGGGTCACATGTATAGAACGAACTGGGGTATTGGTCATGGCCTAAAAGAGATT 1260 Query 183743 TTAGATGGTCAGAATGGT---TTCCCA---CAGGGTGTCACACACAGAGGATTATATGAA 183796 ||||| | ||| || ||| || || |||||| || | |||| ||||||| Sbjct 1259 TTAGAAGCTCATAAAGGTCCATTTACAGGCCAGGGT------CATAAAGGACTATATGAG 1206 Query 183797 TTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAGGATCTATC 183856 | ||| || ||| | ||||| ||| |||| || || || || ||| |||| ||| | Sbjct 1205 ATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGTTAGGCTCTTTA 1146 Query 183857 AGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTGGTATTGAA 183916 | || | || | || ||||||||| | ||||| |||||||||||||| | || ||| Sbjct 1145 ACCATTGTTGTAGCTCACCATATGTATTCCATGCCGCCTTATCCATATCTAGCTACTGAC 1086 Query 183917 TA---TCCA----------------ACAGT-----AGTAG----GA---------TTATT 183939 || | || ||||| ||| | || || || Sbjct 1085 TATGGTACACAATTGTCATTGTTGTACAGTTTTTAAGTCGATTAGAAGATGGATTTTGTT 1026 Query 183940 CACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCAAT 183999 || |||||||||||||| ||||| ||||| || || ||||| || |||| | || Sbjct 1025 TACACATCATATGTGGATTGGTGGATTTCTAATAGTTGGTGCTGTTGCGTATGCAGCCAT 966 Query 184000 TGCTATGATAAGAGACTATAATC---CTGTTCAACATATGGGAAATGTATTAGATAGAAT 184056 | |||||||||||||||| ||| || || | | | | || |||||||| | | Sbjct 965 TTTTATGATAAGAGACTATGATCCAACTACTCGATACAACG---ATCTATTAGATCGTGT 909 Query 184057 ACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGTTT 184116 |||| | | | ||||||||||| || | ||||||| ||| || ||| |||| || Sbjct 908 CCTTAGACATCGTGATGCAATCATATCACATCTTAACTGGGCATGTATTTTTCTAGGATT 849 Query 184117 TCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTGGG 184164 ||| ||||||||| | |||||||| ||||||| ||||| || || || Sbjct 848 TCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGCGCTTTAGG 801 >seq466 Length=215826 Score = 161 bits (178), Expect = 1e-34 Identities = 199/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 186887 CCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTT 186946 || ||||||||||||| | | || || |||| ||||||||||| ||||| ||| | ||| Sbjct 104759 CCTTTTGGTATGAATAGTTTATCGGTCTGGGGGTGGATGTTCTTATTTGGACATCTTGTT 104700 Query 186947 TGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAG 187006 ||||| || ||||||||||| | ||||| || || |||||||| || || ||||| Sbjct 104699 TGGGCTACTAGATTTATGTTCTTAATTTCCTGACATGGCTATTGGCAGGAATTGATTGAA 104640 Query 187007 ACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAA 187066 | | | || ||||| ||| || | || || | || ||| | | |||||||||||| Sbjct 104639 AKTTTAGCATGGGCTCATGAACGTACGCCTTTGGCTAATTTGATTCGATGGAGAGATAAA 104580 Query 187067 CCAGTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGGA 187126 || || |||| ||| ||||| ||||||||| ||||| | ||| | || ||| | |||| Sbjct 104579 CCGGTTGCACATTCCATTGTGCAAGCAAGATTAGTTAGATTAGCCCACTTTTCTGTAGGT 104520 Query 187127 TTTGTGCTTACCTATGCACCATTCCTGATAGC 187158 | | | | || ||||| | ||| |||| || Sbjct 104519 TATATATTCACTTATGCGGCTTTCTTGATTGC 104488 >seq194 Length=269275 Score = 132 bits (146), Expect = 6e-26 Identities = 229/335 (68%), Gaps = 22/335 (7%) Strand=Plus/Plus Query 191270 TTTGGAGTTGCA-GCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTAC 191328 ||||| || ||| || || ||| ||| || || || ||||||| || || ||| || Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 191329 ACTCAACCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGC 191388 | ||||| || || |||||||||||||| ||| | |||| | || || |||||||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 191389 CATTCATGGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGG 191448 |||||||||||||| || | || || || | ||| |||||| Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGA------------------AGATGG 237078 Query 191449 TCAAGTTCAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTC 191508 | | | | || |||| || | || ||| | ||||| || | || ||||||||||| Sbjct 237079 TGATGGTGCAAATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTC 237135 Query 191509 TATGATCACTGCAAACAGATTCTGGTCACAGATATTTGGTATTGCATTCTCTAACAAAAG 191568 ||| | || || ||| | || ||||| || || ||||| |||| || ||||| ||| | Sbjct 237136 AATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACG 237195 Query 191569 ATTTCTACACTTCTTGATGTTGTTTGTTCCTGTAA 191603 | |||| ||||| ||||| ||||| || |||| Sbjct 237196 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 237230 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 191059 TCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTAGCACTTCATGGTGTATTTGGTCT 191118 |||||||| ||| ||||| || |||| ||||| || || || |||| ||||| || Sbjct 238050 TCGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACT 237991 Query 191119 CATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGATTGGTGGGTATTA-GACCTTACA 191177 ||||| |||||||||||||| |||||| |||| ||| || |||| | ||||| | Sbjct 237990 AATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGT-TCAATTACGTCCTTATA 237932 Query 191178 ATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCAC 191237 |||| || | || |||| || || |||| || |||||| || ||||||| Sbjct 237931 ATGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCAC 237872 Query 191238 TTGGTCAGCACAGTTGGTTCTTTG 191261 | ||||| ||||||| |||| Sbjct 237871 TAAGTCAGTCGGGTTGGTTTTTTG 237848 >seq449 Length=156835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 183893 CCTTATCCATATCTTGGTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATG 183952 |||||||||||||| | || ||| ||| | | | | ||| || || ||||||||| Sbjct 45170 CCTTATCCATATCTAGCTACTGACTATGGTATACAATTGTCATTGTTTACACATCATATG 45229 Query 183953 TGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGA 184012 ||||| ||||| ||||| || || ||||| | || ||||| ||| |||||||| | Sbjct 45230 TGGATTGGTGGATTTCTAATAGTTGGTGCTGCTGCGCATGCAGTCATTTTTATGATAATA 45289 Query 184013 GACTATAATCC 184023 |||||| |||| Sbjct 45290 GACTATGATCC 45300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631358090292960