Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2233 86.0 6e-12 >seq2233 Length=51071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || | || || ||| || || || || |||||||| || Sbjct 6446 ACATGAGCAATCATGCATGTCAAAAGGGCATAAGATGCGATATTAAATGGCACCCCCAAA 6505 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | ||||||||||| | ||||| |||||||| || ||||| ||||| || Sbjct 6506 CCCATATCAGCAGATCGTTGATACATTTGGCACGACAGCTCGCCTTTCGCAACGTAAAAC 6565 Query 6737 TG 6738 || Sbjct 6566 TG 6567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || ||||| ||||| || |||||||| ||||| | ||||||||||| | || ||| Sbjct 6567 CAGTTTTACGTTGCGAAAGGCGAGCTGTCGTGCCAAATGTATCAACGATCTGCTGATATG 6508 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || || |||||||| || || || || ||| || || | || | |||||| |||||| Sbjct 6507 GGTTTGGGGGTGCCATTTAATATCGCATCTTATGCCCTTTTGACATGCATGATTGCTCAT 6448 Query 34727 GT 34728 || Sbjct 6447 GT 6446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448213337680320