Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03]
8,756 sequences; 309,692,940 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq771 89.7 4e-13
seq1646 87.8 1e-12
seq139 87.8 1e-12
seq187 84.2 2e-11
>seq771
Length=161796
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || |||| || ||||| |||| || |||||||| ||||| | ||
Sbjct 43363 GACAAAGAGGGAATTCCCTCAGACCAGCAGAGGTTGATATTTGCCGGGAAACAGCTTGAG 43422
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | | | |||||||||||||||| || ||||| || ||||| |||||| |
Sbjct 43423 GATGGGCGTACCGTAGCCGATTACAACATCCAGAAGGAGAGTACCTTGCACTTGGTTCTA 43482
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||||||
Sbjct 43483 CGTCTCCGTGGCGG 43496
>seq1646
Length=84127
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || |||||||| ||||| || || || || || | || ||||||||| ||
Sbjct 62325 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAAAGCTCC 62266
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || |||| ||||| ||||| || ||||| ||| |||| || |
Sbjct 62265 GATACCATCGACAAC--GTCAAGGCTAAAATTCAGGATAAAGAGGGTATTCCCCCAGACC 62208
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || ||||||||||| || || || || | || | | | |||| ||||
Sbjct 62207 AGCAGAGGCTCATCTTTGCCGGAAAGCAGTTAGAAGATGGTCGTACCCTAGCCGACTACA 62148
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||| || |||||||| | || ||||| | |||||| | || ||
Sbjct 62147 ATATCCAGAAGGAGAGCACCCTACACTTGGTCCTACGTTTGAGAGGTGG 62099
>seq139
Length=432677
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||||||||| || ||||| || |||||| | || || || ||| |
Sbjct 178559 AATGCAAATCTTTGTGAAAACCCTCACTGGAAAGACTATTACTCTAGAGGTTGAGAGCTC 178500
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | ||| ||||| ||| || ||||| || ||| ||||| ||
Sbjct 178499 GGATACCATCGATAAT--GTCAAGACAAAGATTCAAGACAAGGAGGGTATTCCGCCAGAT 178442
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || | || |||||||| || || | || |||| ||||| | | | ||||||
Sbjct 178441 CAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGACGCACCCTTGCTGATTAC 178382
Query 27967 AACATCCAAAAAGA 27980
||||| ||||| ||
Sbjct 178381 AACATTCAAAAGGA 178368
>seq187
Length=363338
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || | || || || || || | || || || ||| ||
Sbjct 22222 ATGCAAATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCTTGGAGGTTGAGAGCTCC 22163
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| ||||| ||||| ||||| || || |||| ||| |
Sbjct 22162 GACACCATAGACAAC--GTCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCGGATC 22105
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || || ||||| ||||| |||| |||| |||| | | | |||||||
Sbjct 22104 AGCAGAGGCTCATCTTCGCCGGTAAACAGCTGGAGGACGGCCGCACCCTAGCTGATTACA 22045
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || ||||| || |||| |||||| | ||| | ||||| ||
Sbjct 22044 ACATCCAGAAGGAGAGTACCCTGCACTTGGTTCTACGTCTCCGTGGTGG 21996
Score = 82.4 bits (90), Expect = 5e-11
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| || ||||| || || |||||||| || || || | || || || ||| |
Sbjct 22679 AATGCAGATATTTGTCAAGACGCTTACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTC 22620
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| || ||||| || ||| || || ||||| ||||| |||| |||
Sbjct 22619 CGACACCATAGACAAT--GTTAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGAT 22562
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| || | || |||||||||||||| | || |||| || | ||| | | || ||
Sbjct 22561 CAGCAGAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGTCGTACGCTAG-CTGACTA 22503
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||| ||||| || || || || || || ||||| | |||||| | || |||
Sbjct 22502 CAATATCCAGAAGGAAAGTACCTTACACTTGGTCCTACGTTTGAGAGGTGGC 22451
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || || ||||| || || ||||| |||| || || ||| ||
Sbjct 42055 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 41996
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| ||||| || || ||||| ||||| |||| ||| |
Sbjct 41995 GACACCATCGACAAC--GTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATC 41938
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || |||||||||||||| | || |||| ||| | | | |||| ||||
Sbjct 41937 AGCAAAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGTACCCTTGCCGACTACA 41878
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
||||||| || ||| |||| | || ||||
Sbjct 41877 ACATCCAGAAGGAGTCCACTCTCCACCTGGT 41847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355824424588812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |