Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq771 89.7 4e-13 seq1646 87.8 1e-12 seq139 87.8 1e-12 seq187 84.2 2e-11 >seq771 Length=161796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || ||||| |||| || |||||||| ||||| | || Sbjct 43363 GACAAAGAGGGAATTCCCTCAGACCAGCAGAGGTTGATATTTGCCGGGAAACAGCTTGAG 43422 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | | |||||||||||||||| || ||||| || ||||| |||||| | Sbjct 43423 GATGGGCGTACCGTAGCCGATTACAACATCCAGAAGGAGAGTACCTTGCACTTGGTTCTA 43482 Query 28003 CGTTTGCGTGGCGG 28016 ||| | |||||||| Sbjct 43483 CGTCTCCGTGGCGG 43496 >seq1646 Length=84127 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || || || || || | || ||||||||| || Sbjct 62325 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAAAGCTCC 62266 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| ||||| || ||||| ||| |||| || | Sbjct 62265 GATACCATCGACAAC--GTCAAGGCTAAAATTCAGGATAAAGAGGGTATTCCCCCAGACC 62208 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||||||||| || || || || | || | | | |||| |||| Sbjct 62207 AGCAGAGGCTCATCTTTGCCGGAAAGCAGTTAGAAGATGGTCGTACCCTAGCCGACTACA 62148 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || |||||||| | || ||||| | |||||| | || || Sbjct 62147 ATATCCAGAAGGAGAGCACCCTACACTTGGTCCTACGTTTGAGAGGTGG 62099 >seq139 Length=432677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| || ||||| || |||||| | || || || ||| | Sbjct 178559 AATGCAAATCTTTGTGAAAACCCTCACTGGAAAGACTATTACTCTAGAGGTTGAGAGCTC 178500 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| ||||| ||| || ||||| || ||| ||||| || Sbjct 178499 GGATACCATCGATAAT--GTCAAGACAAAGATTCAAGACAAGGAGGGTATTCCGCCAGAT 178442 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || |||||||| || || | || |||| ||||| | | | |||||| Sbjct 178441 CAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGACGCACCCTTGCTGATTAC 178382 Query 27967 AACATCCAAAAAGA 27980 ||||| ||||| || Sbjct 178381 AACATTCAAAAGGA 178368 >seq187 Length=363338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | || || || || || | || || || ||| || Sbjct 22222 ATGCAAATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCTTGGAGGTTGAGAGCTCC 22163 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| ||||| ||||| || || |||| ||| | Sbjct 22162 GACACCATAGACAAC--GTCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCGGATC 22105 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| ||||| |||| |||| |||| | | | ||||||| Sbjct 22104 AGCAGAGGCTCATCTTCGCCGGTAAACAGCTGGAGGACGGCCGCACCCTAGCTGATTACA 22045 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||| || |||| |||||| | ||| | ||||| || Sbjct 22044 ACATCCAGAAGGAGAGTACCCTGCACTTGGTTCTACGTCTCCGTGGTGG 21996 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || |||||||| || || || | || || || ||| | Sbjct 22679 AATGCAGATATTTGTCAAGACGCTTACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTC 22620 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| || ||| || || ||||| ||||| |||| ||| Sbjct 22619 CGACACCATAGACAAT--GTTAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGAT 22562 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || |||||||||||||| | || |||| || | ||| | | || || Sbjct 22561 CAGCAGAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGTCGTACGCTAG-CTGACTA 22503 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||| ||||| || || || || || || ||||| | |||||| | || ||| Sbjct 22502 CAATATCCAGAAGGAAAGTACCTTACACTTGGTCCTACGTTTGAGAGGTGGC 22451 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || ||||| || || ||||| |||| || || ||| || Sbjct 42055 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 41996 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 41995 GACACCATCGACAAC--GTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATC 41938 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||||||||| | || |||| ||| | | | |||| |||| Sbjct 41937 AGCAAAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGTACCCTTGCCGACTACA 41878 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || ||| |||| | || |||| Sbjct 41877 ACATCCAGAAGGAGTCCACTCTCCACCTGGT 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355824424588812