Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq771 98.7 9e-16 seq1646 91.5 1e-13 seq187 86.0 5e-12 seq1470 84.2 2e-11 >seq771 Length=161796 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| ||||| ||||| ||| ||| ||||| |||||||| || ||| Sbjct 43268 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTGGACTCCTTTTGGATATTATAGTCAGCA 43209 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || ||| ||||||||||| || ||||| || || | ||||||||| | || Sbjct 43208 AGGGTACGACTGTCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 43149 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | | ||| || ||| ||| || | | | ||| | | | || || ||| ||| Sbjct 43148 ATACCCTCCTTATCCTGGATCTT-GGCCTTAACGTTGTCGATGGTGTCTGAGCT---CTC 43093 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | ||||| | || || || || || ||||||||||| ||||||| Sbjct 43092 GACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTAACAAAGATCTGCATCT 43040 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||||| || | || ||||| || || || || |||||||| | || || | Sbjct 43484 CGTAGAACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAATCGGCTACGGTACGCCCA 43425 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||||||||| || |||||||| | | ||||||||| | ||| | | ||||||| Sbjct 43424 TCCTCAAGCTGTTTCCCGGCAAATATCAACCTCTGCTGGTCTGAGGGAATTCCCTCTTTG 43365 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| |||| || | | || ||| ||| || |||| || | Sbjct 43364 TCTTGGATTTTAGCCTTGACGTTCTCGATGGTGTCGGAACTCTCGACTTCCAAAGTTACG 43305 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || || ||||| ||||| Sbjct 43304 GTCTTTCCTGTGAGGGTATTCACGAAGATCTGCAT 43270 >seq1646 Length=84127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | |||| || || ||| ||| ||||| ||||| || || || Sbjct 61871 CCACCTCTGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGCT 61930 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || |||| || |||||||| || ||||| || || | ||||||||| |||||| Sbjct 61931 AGGGTGCGGCCGTCTTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 61990 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | ||||||||| ||||||| |||| | | | || || ||| || Sbjct 61991 -ATACCCTCTTTGTCTTGGATTTTCGCCTTGACATTGTCAATGGTGTCAGAGCTT---TC 62046 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | ||||| || || || || |||||||||||||| Sbjct 62047 AACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 62097 >seq187 Length=363338 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||||| || || || ||||| || || || || ||||| || || || || || Sbjct 22008 CGTAGAACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCG 22067 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || || || || || | |||||| || | ||| | | ||| ||| Sbjct 22068 TCCTCCAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTG 22127 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||||| |||| ||| | | | || ||| ||| || |||| ||||| Sbjct 22128 TCTTGAATTTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTCTCAACCTCCAAGGTGAT 22186 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| ||| || |||||||||||||| Sbjct 22187 GGTCTTGCCGGTCAACGTCTTGACAAAGATTTGCAT 22222 >seq1470 Length=49555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| ||||| || | || ||||| || || || || || |||||| Sbjct 30842 CCACCTCTCAAACGTAGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAGTCGGCA 30783 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || ||||||||||| || ||||| || || | ||||||||| | || Sbjct 30782 AGGGTACGACCATCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 30723 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| || || |||||| || | | || | | | || ||| ||| || Sbjct 30722 ATTCCCTCCTTATCTTGGATTTT-TGCCTTAACGTTATCAATGGTGTCGGAGCTCTCGAC 30664 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || || || || || || |||||||| ||||||| Sbjct 30663 CTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATCT 30614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429499761578228