Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1083 120 2e-22 seq139 118 7e-22 seq1646 102 6e-17 seq187 95.1 8e-15 seq771 87.8 1e-12 seq1470 84.2 1e-11 >seq1083 Length=90715 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || |||||||| ||||| ||||| || || | | Sbjct 36575 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAAACCATCACCCTCGAGGTGGAAGGCTCC 36516 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||| | | ||||||||||| Sbjct 36515 GACACAATCGACAACGTGAAATCGAAAATACAGGACAAAGAGTGCATCCCGCCAGATCAG 36456 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || |||||||| || || | |||||||||| ||| |||||| Sbjct 36455 CAAAGACTCATCTTTGCTGGAAAACAACTCGAGGATGGTCGCACTTTAGCCGACTACAAC 36396 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 ||||| || ||||| || ||||| Sbjct 36395 ATACAGAAGGAGTCTACTCTACAT 36372 >seq139 Length=432677 Score = 118 bits (130), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||||||||| ||||| || || ||||| || ||||| | | Sbjct 178559 AATGCAAATCTTTGTGAAAACCCTCACTGGAAAGACTATTACTCTAGAGGTTGAGAGCTC 178500 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || | || ||| | || ||||| | || ||||| || ||| | |||||||||| Sbjct 178499 GGATACCATCGATAATGTCAAGACAAAGA-TTCAAGACAAGGAGGGTATTCCGCCAGATC 178441 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || || || |||| |||||| | | ||||||| Sbjct 178440 AGCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGACGCACCCTTGCTGATTACA 178381 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || || || Sbjct 178380 ACATTCAAAAGGAATCTAC 178362 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || | ||||| ||||||||||| | || || || | Sbjct 177874 ATGCAAATCTTTGTTAAGACGTTGACGGGGAAAACGATCACATTGGAGGTGGAGAGTTCA 177815 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | || || || || || | || ||||| || Sbjct 177814 GACACTATTGATAATGTGAAGGCTAAGA-TTCAAGATAAGGAGGGGATCCCACCAGACCA 177756 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || ||||| ||||||| | ||| ||||||| || ||||| Sbjct 177755 GCAGAGGCTGATATTTGCTGGTAAACAGTTGGAAGATGGACGGACTTTAGCTGACTACAA 177696 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||||||||| | ||||| |||||| | |||| ||||| Sbjct 177695 CATTCAGAAAGAGTCCACTCTTCATTTGGTTTTACGCCTGCGGGGAGG 177648 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||| | || || || || |||||||| || || || | Sbjct 178102 ATGCAGATTTTTGTTAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTCGAGAGTTCT 178043 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | ||| || || ||||| ||| | || |||||||| Sbjct 178042 GATACAATCGATAATGTTAAGGC-AAAGATCCAGGATAAAGAGGGTATTCCTCCAGATCA 177984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || || |||| || || | | ||||||| Sbjct 177983 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTAGAGGACGGTCGTACACTTGCAGATTACAG 177924 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || ||||| ||| | ||||| || | | ||| | ||||| Sbjct 177923 CATACAGAAGGAGTCGACACTTCATTTGGTGCTCCGTTTGAGGGGAGG 177876 >seq1646 Length=84127 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| | || || || | || Sbjct 61413 ATGCAGATATTCGTCAAGACCCTTACTGGGAAGACCATCACATTGGAGGTGGAGAGCTCG 61354 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| |||||| || ||||| || || | || ||||| || Sbjct 61353 GATACCATTGACAACGTTAAGGCAAAAA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 61295 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| ||||| || ||||||| | | ||||| | |||||| || Sbjct 61294 GCAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAA 61235 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 61234 CATCCAGAAAGAGTCCAC 61217 >seq187 Length=363338 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || || ||||| | || ||||| || Sbjct 29432 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACTATCACCTTGGAGGTTGAGAGTTCG 29373 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || ||| || || || ||| | || ||||| || Sbjct 29372 GATACGATCGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 29313 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||| || ||||||| | | ||||| | |||||| ||| Sbjct 29312 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAAC 29253 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 29252 ATCCAGAAAGAGTCCAC 29236 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || || || ||||| | || || || | | Sbjct 41827 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCTCC 41768 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | |||| || || || || || | || |||||||| Sbjct 41767 GACACCATCGACAACGTTAAGGCGAAAA-TTCAAGATAAGGAGGGAATTCCCCCAGATCA 41709 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| ||||| || || |||| ||| || | | ||| ||||| Sbjct 41708 ACAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGACGGACGTACCCTTGCCGACTACAA 41649 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 41648 CATCCAGAAGGAGTCTAC 41631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || || ||||| ||||| ||||| | Sbjct 30116 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 30057 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| ||||||||||| | || ||||| || Sbjct 30056 GACACCATTGATAACGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCCCCAGACCAG 29997 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || |||||||| ||||| || |||| ||| || | | || |||||| Sbjct 29996 CAAAGGCTCATCTTCGCCGGCAAGCAACTTGAGGACGGACGTACCCTTGCTGACTACAAC 29937 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || || || | |||||| | || || Sbjct 29936 ATCCAGAAGGAATCTACCCTCCACTTGGTGCTCAGGTTGAGGGGTGG 29890 >seq771 Length=161796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || | ||| | ||||| || | Sbjct 43270 ATGCAGATCTTCGTGAATACCCTCACAGGAAAGACCGTAACTTTGGAAGTCGAGAGTTCC 43329 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| |||||||| || | || |||| || Sbjct 43330 GACACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAAGAGGGAATTCCCTCAGACCAG 43389 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||||||||| ||||| || || || | || || ||| |||||||||| Sbjct 43390 CAGAGGTTGATATTTGCCGGGAAACAGCTTGAGGATGGGCGTACCGTAGCCGATTACAAC 43449 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || || ||| || || || || ||| || Sbjct 43450 ATCCAGAAGGAGAGTACCTTGCACTTGGTTCTA 43482 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||||||||| || || | | Sbjct 43042 ATGCAGATCTTTGTTAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 43101 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || || || || || ||| | || ||||| || Sbjct 43102 GACACCATCGACAACGTTAAGGC-CAAGATCCAGGATAAGGAGGGTATCCCTCCAGACCA 43160 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| ||||| || || ||| || || | | || || || Sbjct 43161 GCAGAGGCTCATCTTTGCCGGAAAACAGCTTGAGGACAGTCGTACCCTTGCTGACTATAA 43220 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| |||||||| |||| || || || | ||| |||| || Sbjct 43221 TATCCAAAAGGAGTCCACCCTACACTTGGTCCTACGTTTGAGAGGTGG 43268 >seq1470 Length=49555 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||||||||| || || | | Sbjct 30616 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 30675 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | |||||| || || || || | || ||||| || Sbjct 30676 GACACCATTGATAACGTTAAGGC-AAAAATCCAAGATAAGGAGGGAATCCCTCCAGACCA 30734 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| ||||| || || || | || || | | ||| ||||| Sbjct 30735 GCAGAGGCTCATCTTTGCCGGAAAACAGCTTGAGGATGGTCGTACCCTTGCCGACTACAA 30794 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||| || || || || || || | ||| |||| || Sbjct 30795 CATCCAGAAGGAGAGTACCTTGCACTTGGTCCTACGTTTGAGAGGTGG 30842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337973529728048