Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03]
8,756 sequences; 309,692,940 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq928 114 2e-20
seq1254 104 3e-17
>seq928
Length=80382
Score = 114 bits (126), Expect = 2e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211
|||| ||| || ||||| | ||| | || |||| |||| | |||| || ||||||||
Sbjct 50758 TTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAAC 50817
Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271
||| || || ||||| |||||||||||| |||||| || || | || || ||||||
Sbjct 50818 AATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATG 50877
Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331
|| |||| |||||||| || || ||| ||| | ||| || |||||| |||
Sbjct 50878 AACAGATACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATC 50937
Query 78332 GTAGATACCCTCTATACTGTCATCCATCATG 78362
|| || || || ||||| |||||| |||||
Sbjct 50938 ATAAATTCCTTCAATACTATCATCCTTCATG 50968
Score = 113 bits (124), Expect = 6e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
||||| ||||||||||| || || |||||||| ||||||||| | | ||| | | ||
Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||| |||||||| || || || || |||||||| || | ||| | ||| |||
Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827
Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578
|| || || || |||||||| || |||| ||||| ||| || || |||| |
Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887
Query 78579 GTTTTAAAACCAAAATA 78595
|||||||||||||| ||
Sbjct 51888 GTTTTAAAACCAAAGTA 51904
>seq1254
Length=70693
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || ||||| | ||| | || |||| ||| |||| | |||||| ||||| |||||
Sbjct 37260 ACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACC 37201
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|||||||| |||||||||||| ||||||||| || | || || ||||| || ||
Sbjct 37200 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGA 37141
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
|| || ||||| || || ||| || | || || |||||| ||||| || ||
Sbjct 37140 TACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAAT 37081
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
|| || || || ||||| |||| | || ||||||||
Sbjct 37080 TCCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039
Score = 86.0 bits (94), Expect = 9e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | ||||| ||||| || || ||||| | | || | |||| |
Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| |||| | | || || || ||| || ||| || || || || || | |||||||
Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234
Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578
|| || || ||||| || || ||| | |||||||||||||| || | || |
Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174
Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||||| |||||||| |||| || |||||| | || || |||||
Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735
||||| || |||||||| ||||||||||| || | | | | || | |||||
Sbjct 38511 AAAGCAATTGATGCTAGGTTACAAACTGCAGTTTCTGTTGGACTAGTGTACTCAATTATT 38452
Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795
|| ||||| || || | | ||||||||||| ||||| || || ||||||||| |||||
Sbjct 38451 TCAGTACAAAGGTTTGAAGACTTGATAGTGCCGAGATTCTGCTGATTGCTCTTTCTATTG 38392
Query 77796 CATGAGTCCTTATAAA 77811
||||| |||| || ||
Sbjct 38391 CATGAATCCTAATTAA 38376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694592768499840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |