Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq928 114 2e-20 seq1254 104 3e-17 >seq928 Length=80382 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 |||| ||| || ||||| | ||| | || |||| |||| | |||| || |||||||| Sbjct 50758 TTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAAC 50817 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 ||| || || ||||| |||||||||||| |||||| || || | || || |||||| Sbjct 50818 AATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATG 50877 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 || |||| |||||||| || || ||| ||| | ||| || |||||| ||| Sbjct 50878 AACAGATACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATC 50937 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATG 78362 || || || || ||||| |||||| ||||| Sbjct 50938 ATAAATTCCTTCAATACTATCATCCTTCATG 50968 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||||||||| || || |||||||| ||||||||| | | ||| | | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||| |||||||| || || || || |||||||| || | ||| | ||| ||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || || |||||||| || |||| ||||| ||| || || |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 78579 GTTTTAAAACCAAAATA 78595 |||||||||||||| || Sbjct 51888 GTTTTAAAACCAAAGTA 51904 >seq1254 Length=70693 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || |||| ||| |||| | |||||| ||||| ||||| Sbjct 37260 ACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACC 37201 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||||| |||||||||||| ||||||||| || | || || ||||| || || Sbjct 37200 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGA 37141 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || ||||| || || ||| || | || || |||||| ||||| || || Sbjct 37140 TACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAAT 37081 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| |||| | || |||||||| Sbjct 37080 TCCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||||| ||||| || || ||||| | | || | |||| | Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| | | || || || ||| || ||| || || || || || | ||||||| Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || ||||| || || ||| | |||||||||||||| || | || | Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| |||| || |||||| | || || ||||| Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 ||||| || |||||||| ||||||||||| || | | | | || | ||||| Sbjct 38511 AAAGCAATTGATGCTAGGTTACAAACTGCAGTTTCTGTTGGACTAGTGTACTCAATTATT 38452 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || ||||| || || | | ||||||||||| ||||| || || ||||||||| ||||| Sbjct 38451 TCAGTACAAAGGTTTGAAGACTTGATAGTGCCGAGATTCTGCTGATTGCTCTTTCTATTG 38392 Query 77796 CATGAGTCCTTATAAA 77811 ||||| |||| || || Sbjct 38391 CATGAATCCTAATTAA 38376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694592768499840