Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq928 123 4e-23 seq694 113 6e-20 seq1254 109 8e-19 >seq928 Length=80382 Score = 123 bits (136), Expect = 4e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 76747 TTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 |||| ||| || ||||| | ||| | || |||| |||| | |||| || |||||||| Sbjct 50758 TTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAAC 50817 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 |||||| || ||||| |||||||||||| |||||| || || ||||| |||||| Sbjct 50818 AATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATG 50877 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || ||||| |||||||| || || || || | |||||| |||||| || Sbjct 50878 AACAGATACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATC 50937 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATG 76957 ||| || || || |||||||||||| ||||| Sbjct 50938 ATAAATTCCTTCAATACTATCATCCTTCATG 50968 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| || ||||| ||||||||||| |||||| | | ||| | | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||| ||| ||| || ||||| || |||||||| |||| || | ||| ||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | ||| ||| || |||| ||||| ||| || || |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 77174 GTTTTAAAACCAAAATA 77190 |||||||||||||| || Sbjct 51888 GTTTTAAAACCAAAGTA 51904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || |||| ||| | ||||| ||| ||| |||||||| | | |||| || ||||| | | Sbjct 47848 AAAACTCGACGACTATAAATGTTAGAGGTGTATGGTTCAAAACATTCGTTATTTCCAAGA 47907 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 ||||| ||||||||||| ||||| ||||| || | | ||||||| |||| | Sbjct 47908 ATTTGGCTTGTTGAAGCAGTGGGCATTGGTGCTACTAGAAGTGAGTTTCTGACTCCATCT 47967 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 || | || | || | ||| |||||||||| ||| || ||| ||||| |||| Sbjct 47968 TTTGTTATCGTGCCTCTAAGAGTAGTCCAATCCCATCTATCGGAAGGTGCAACACCCCAC 48027 Query 75917 AGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 48028 ATATCTGGTTGAAGAATTCC 48047 >seq694 Length=127158 Score = 113 bits (124), Expect = 6e-20 Identities = 248/366 (68%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| ||||| || || || | |||||| || ||||||||||| || | ||| ||| Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttA-AATCCTAATTCTGAAA 46456 ||||| ||||||||||||| ||||| || ||||||| | | || || ||| || Sbjct 32618 CTCCATCCAATCAAACGGATTTTGCACATTGTACATTTTTTCATACCCCAAAGCCTGCAA 32559 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 |||||||| || || || || || || |||||| |||| ||||||||| | | Sbjct 32558 -AAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCCCACAA 32500 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 | |||| || || || ||| ||| | ||||| ||| ||||| || | | Sbjct 32499 GGGCACAAGGTAATGCATCGCAAACAAATTCTCGCTCAATCACGACCGCATCAGACACAA 32440 Query 46577 TCGATGTTACTGTTTCCTCACTTGG--TG-GATGCATCAAATGTTTAAACATTAAACATG 46633 || | | || | |||||||| | || | || ||| | | | | ||||| | Sbjct 32439 TCTCTCTCACCCTCTCCTCACTAAGCTTGTTTTTCAGCAACTCGT---AGAGCAAACAAG 32383 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||||||||| |||||||| || |||| | ||| || || || || || ||||| || | Sbjct 32382 CAAAATCACAGTGAAGGCCCTCGTCTCGAGAAATCAACTCATTTGAGAACGTGAGACCTG 32323 Query 46694 GCATTA 46699 |||||| Sbjct 32322 GCATTA 32317 >seq1254 Length=70693 Score = 109 bits (120), Expect = 8e-19 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | ||||||| ||| |||| | |||||| ||||| || || Sbjct 37260 ACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACC 37201 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 |||||||| |||||||||||| ||||||||| || || || ||||| || || Sbjct 37200 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGA 37141 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || ||||| || || || ||| | ||||| |||||| || ||||| || Sbjct 37140 TACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAAT 37081 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| |||| | || |||||||| Sbjct 37080 TCCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || ||||| ||||||||||| | | || | |||| | Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| | || | || |||||| || ||| || || ||||| || | ||||||| Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| || ||| ||| | |||||||||||||| || | || | Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| |||| || |||||| | || || ||||| Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712856369329920