Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq912 279 3e-70 seq5531 105 4e-18 >seq912 Length=70991 Score = 279 bits (308), Expect = 3e-70 Identities = 724/1083 (67%), Gaps = 38/1083 (4%) Strand=Plus/Minus Query 58700 GTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCGCTGC 58759 ||||||||||| | ||| || || || || |||||||||| ||| ||||| ||| Sbjct 46686 GTGTTCCACAGGATGATCGCGGCGACCAGCAAGTTGAGGCCGGAGGCGCGGTAAGACTGA 46627 Query 58760 TGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGCCAGC 58819 | ||||| || || | | || || || |||||||||||| || | ||| ||| Sbjct 46626 TTTTCGAACTGGCGGTCGCGCAGCTCGCCGAGCTGGTTGAAGAACAATGCGCGGGCAAGC 46567 Query 58820 GAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAACACTT 58879 | |||||||||||| || |||||||| || || || ||| | |||||| |||| Sbjct 46566 GCGTTGCGCGCCTCCCCCTTGTTCAGCCCCGCCTGGGTGCGCCTGCGCAGATCAATGTCC 46507 Query 58880 TGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGCCACG 58939 |||| |||||| || ||||| | || ||| |||| ||| || ||||||||||| || | Sbjct 46506 TGCAACCAGTCGAGCATGAAGATCGAGCGTTCGAGCCGTCCGAGCTCGCGCAGCGCTAAT 46447 Query 58940 GCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGTGACG 58999 ||||| |||||||||||||| ||| | |||||||||||||| ||| ||||||||| Sbjct 46446 GCCAGACCGTTCTGGCGCGGATAGGCGGACAGCTTGCGCAGCATAGCCGACGCGGTGACG 46387 Query 59000 GTGCCCTGCTT--GATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTGGGCACGCACGT 59057 || || | || ||||||| |||| || ||||| | |||||||| || || | || Sbjct 46386 GTTCC--GGTTCGGATCGAGGTGGCGAGCCGCAGCAGTTCGTCCCAATGCGCGGCTAAGT 46329 Query 59058 GCTTGATGTTC-AGGGTGCCGCCGATCA-GCGGGC--GCAACGTCGGGTAGGCTTGCACG 59113 | | | || | | | |||| | || || ||| |||| ||| |||| | Sbjct 46328 GGTCG-TGCGCGATCGGATCGCCAACCATGCCGGCAAGCAA---CGGCCCCGCTTCCTGC 46273 Query 59114 CCCTGCGGCACGTACAGCTTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAG 59173 || || | | || ||| | || || || || | ||| |||||||||||| || Sbjct 46272 CCGGGCAGGAGGTGCAGGCGGCGCTCCTTGATATCACGCAAGCGTGGCGCGAAGCGGTAG 46213 Query 59174 CCTAGCAGGTGCATCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGC 59233 || | | ||||||| | || || || |||| |||| |||| ||||| || ||| Sbjct 46212 CCGAAGAACGGCATCAGCCCGAACACATGGTCGGACGCGCCGCCCGTATCGGTATAATGC 46153 Query 59234 TCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAAT-- 59291 || |||||| || ||| || ||| ||||||| |||||||| ||||||| | | Sbjct 46152 TCTTCGATCGACAACCCGGTCTGGTGATACAGCAAACCGTCGAGGACATAGGGAGCCTCG 46093 Query 59292 --CGCGGACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATG 59349 ||||| ||| | || |||||| | || |||||| | |||||||| |||||||| Sbjct 46092 CCCGCGGTCGCGGCGAT----CACGCGCGAGCCGAACGGGTCATACTGGTCCGAGATATG 46037 Query 59350 GGTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTC-- 59407 || |||||| | || || ||| | |||| || ||||| | || || || Sbjct 46036 AGTGTAGAACGACACACCGGGTTCGTTGCCGTTGCGCGCGTTGATAT---CGCTGATCGC 45980 Query 59408 -TCGCCCCGGCCACCCGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCC 59466 ||||||| || || || |||| |||| || ||| || ||| | ||||| ||| Sbjct 45979 AGCGCCCCGCCCGCCGGCATGGAATTGCTGTCCGTCGCTCGACGAGCTGATGCCGCTGCC 45920 Query 59467 CCAGTGGGCGGCAA-AGGCGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAG-GCCGCC 59524 ||| |||||| ||| | ||| | || | || ||| ||| || || ||| | Sbjct 45919 CCATAATCCGGCAAGCGGCATCGCGCGA-TGCGCCTCGATCAG-TCGTCCGAGCGCCTCG 45862 Query 59525 GAATAGGTTTCGTCGCGGATGTGCCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGG 59584 ||||| | |||| |||||||||| | ||||| | || |||||| | | | || Sbjct 45861 CCATAGGCGGCTTCGCTGATGTGCCAGTCATGCAGATGCGCGAG-TTGGCGCA-GACTGG 45804 Query 59585 --CCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCATCACCGAGGATTG 59642 || ||| || ||||| |||||| ||||| ||||| |||| | ||||| Sbjct 45803 CACCACGGCAACTGTCCGCCATGCGGGTCAGGCCGAGATTGATGCCATCGGCAAGGATCA 45744 Query 59643 CGGACAGCAGCAACGTCCTGTCTTTGGCC--TCGGCCCCGTCCTTCAAGTGGGTGAAGTG 59700 ||| ||||| | | | ||| | |||| ||||| || | |||||| || Sbjct 45743 CGGTCAGCAACGCATTACGGTCGTCGGCCGGACGGCCTGATC--GCCGGTGGGTAAAACA 45686 Query 59701 GCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGATGCGCGG 59760 | || |||||| ||||| ||||| || | ||| | || ||||| || | ||| || Sbjct 45685 GTCGCCGAAGCCGGTCCACGTATCCACATCGAGCAGGATATCCGTGATTTTCACGCGGGG 45626 Query 59761 CAG 59763 || Sbjct 45625 GAG 45623 >seq5531 Length=14039 Score = 105 bits (116), Expect = 4e-18 Identities = 289/433 (67%), Gaps = 10/433 (2%) Strand=Plus/Plus Query 58576 CCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAG 58635 |||||||||||||||||| || |||||| | |||||||| |||||||| || ||| Sbjct 4789 CCAGACGTAATCGCCGGTGAGATTGATGCGGTCCCAGCCAAGCGGCGAGAGCCGGGACAG 4848 Query 58636 CAGCTCGCCG--TCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGT-GGCGCGTTCCAG 58692 || | |||| || | ||| | ||| | || | || || ||||| | || Sbjct 4849 CA--TAGCCGGATCGATCGGTGTCCCG-CGACGGCGAATTTCTTCAACGGCGCTGCCGAG 4905 Query 58693 GTACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAG-GCCGCTGGCCCGGT 58751 || || |||| | ||| || || || || |||||||| || || | | ||| Sbjct 4906 ATAGCGGCAATTGAACAGGATGATCGCAGCGGTGACAAGGTTGAGCGCAGCCGCGCGGGT 4965 Query 58752 AGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCC 58811 |||| | ||| | || ||| || | || || || || | ||| ||||||| Sbjct 4966 TT-GCTGGTTCTCTAGGCCCCGGTCGCGGAAACGACCGAGCCGATGAAAGGCAACCGCCC 5024 Query 58812 TGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTT 58871 |||||| |||||| |||||||| ||||||| |||| ||| ||| || ||| Sbjct 5025 GGGCCAGGCTGTTGCGTGCCTCACCCTTGTTCAACTCGGCGGTGACGGTGCGACGTAGTG 5084 Query 58872 CAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCA 58931 | | | | ||| ||| ||||||| |||||||||||||| || | ||| |||| Sbjct 5085 CCGGATCGTCGAACCAACGCAGCGTGAACAGGGTGCGCTCGATCCGCCCGACCTCACGCA 5144 Query 58932 GGGCCACGGCCAGTCCGTTCTGGCGCGGGTA-GCTGCCGAGCTTGCGCAGCATCAGCGAG 58990 | ||| |||| || |||||||| | |||| || | | ||||| || |||| ||| Sbjct 5145 GCGCCGCGGCGAGGCCGTTCTGCTGGCGGTAGGCAGAC-AGCTTCTTCAAGATCAACGAT 5203 Query 58991 GCGGTGACGGTGC 59003 | |||||||||| Sbjct 5204 GGCGTGACGGTGC 5216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330863888505496