Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq194 190 3e-43 seq471 114 2e-20 seq60 91.5 2e-13 seq116 86.0 8e-12 seq1059 84.2 3e-11 seq407 84.2 3e-11 >seq194 Length=269275 Score = 190 bits (210), Expect = 3e-43 Identities = 239/327 (73%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 186434 CTTTGGAGTCGCA-GCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGA 186492 |||||| || ||| || || ||| ||||| | | || | |||||||| || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 186493 CGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAG 186552 ||||||| ||||| || |||||||| || || ||| | | || | ||| |||| | | Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 186553 CAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACAT 186612 | || ||||||| |||||| ||||||||| | | ||||||||| || ||||| |||| Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 186613 TCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGAT 186672 || || || | | || |||| |||||||| ||||| ||||| || || ||| | | Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 186673 TCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGC 186732 | ||||| || ||||| || |||| ||| ||||| |||||| | |||||||| ||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 186733 TCTTTGTTCCTGTTATGGGTCTTTGGA 186759 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 186240 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTG 186299 || || || |||| |||||| || |||||||| || |||| || |||||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 186300 CGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTC 186358 || || |||||| | ||| ||| || | ||||| || ||||| ||| | || || Sbjct 237974 CGTCAATTTGAACTTGCTCGATCT-GTTCAATTACGTCCTTATAATGCAATTACATTCTC 237916 Query 186359 TGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTC 186412 ||| || || ||| | |||||| || |||| | || || || || | ||||| Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTC 237862 >seq471 Length=100806 Score = 114 bits (126), Expect = 2e-20 Identities = 196/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 186090 TGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGC 186148 ||||||| || || ||||| ||| || | | ||| ||| |||||| | ||||| || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 186149 AGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 186208 ||| || | |||||| | | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 186209 TCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 186268 ||||||||| | | || |||| ||| | || || || |||| |||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 186269 CGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCT-CGTA 186326 ||| || || | || |||||||||||| | | || |||||| | ||| ||| ||| Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTA 70422 Query 186327 GGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCC 186364 || ||||| || ||||| ||||| || ||||| || Sbjct 70423 ATTA--CGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 186780 GGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAG 186839 || || |||| ||| | |||||||||||||| || |||| | | | |||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 186840 GATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCC 186899 |||||||| || ||||| ||||| ||||| ||||| || || || || ||| | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 186900 TGGA 186903 |||| Sbjct 267456 TGGA 267453 >seq116 Length=395782 Score = 86.0 bits (94), Expect = 8e-12 Identities = 127/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 183409 GCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTC----GATGAGTGGCT 183464 || ||||| | ||||| || || || |||||||| | || || ||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 183465 GTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTA 183524 | || |||||||||| |||| | || | |||||| | |||| || || || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 183525 CATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGC 183584 ||||||||||||||||||| | || |||| | ||||||| |||||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 >seq1059 Length=80178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 171009 GATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGTTCG 171068 ||| | || ||| | || ||| ||||| || ||||| || | || || |||||||| Sbjct 21067 GATTCGGCCGAAAATGCTGGAATTGATCTGCCATATTCTTGCAGAGCGGGCGCTTGTTCC 21126 Query 171069 ACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTTGAT 171128 ||||||||||| || | || |||||| ||||||||||| ||| || ||| | ||| Sbjct 21127 ACCTGTGCTGGTCAAGTGAAGTCTGGTTCCGTTGATCAATCAGATGGTTCCTTCTTAGAT 21186 Query 171129 GATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTGATTGT 171188 || ||||| || || ||||| | || || ||| | || || || | |||||| Sbjct 21187 GAGGATCAAATGGAGCAAGGTTATTTGCTCACTTGCATATCGTACCCGTCTCAGGATTGT 21246 Query 171189 GTAATC 171194 || ||| Sbjct 21247 GTTATC 21252 >seq407 Length=272206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 186474 CAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTT 186533 |||||||| || || ||||||||||| | ||| || |||||||| || || ||| | | Sbjct 61915 CAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTATTA 61974 Query 186534 GGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGAT 186593 || | ||| |||| | || || |||||| || | | ||||||||| | | ||||||| Sbjct 61975 GGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAGAT 62034 Query 186594 GGCGAACAAGCAAACACATTC 186614 || || |||| |||||| Sbjct 62035 GGTGATGGTACAAATACATTC 62055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622002314394720