Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq194 208 8e-49 seq471 152 6e-32 seq116 111 2e-19 seq407 102 9e-17 >seq194 Length=269275 Score = 208 bits (230), Expect = 8e-49 Identities = 239/320 (75%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 165638 AGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTT 165697 ||| || || |||||| | ||||| | ||||| || ||||| |||||| |||| || || Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 165698 TCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGT 165757 ||| |||||||| || || ||| | ||||| | || ||||| | ||| |||||||||| Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 165758 TACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGA 165817 ||| || || |||||||| | |||||||||||| ||||| || ||| || ||| | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 165818 TAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGAT 165877 ||||| | || ||||||||||| ||||| || |||||||| || ||||| || || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 165878 TTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGT 165937 ||||| ||||||| ||||| |||||| | || ||||||||| | ||||| || || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 165938 CATGGGACTTTGGACAAGTT 165957 | || | |||| ||||| Sbjct 237229 AACCGGTTTATGGA-AAGTT 237247 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 165417 CGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTT 165476 || ||||| ||| || || || ||||||||||| || |||||||| || |||| ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 165477 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 165535 |||||||||||| | || || |||||||| || ||| || || | | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAA 237931 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| ||| | |||||||| || |||||| | || ||| || || | || ||||| || Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 165596 GGGACAATCGTCCTGGTTCTT 165616 | || ||| ||||| || Sbjct 237870 AAGTCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 152 bits (168), Expect = 6e-32 Identities = 203/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 165282 TGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGC 165340 ||||||| ||| ||| | || ||||||||| | | ||| ||||| ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 165341 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTC 165400 |||||||| || || | | | | |||||| | || | || ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 165401 TCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCA 165460 ||||| || || | || ||||| ||| | || || || ||||||||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 165461 CGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGG 165520 ||| || || | ||| |||||||||||| | | || |||||||| || ||| | | | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGT-GT 70421 Query 165521 TATT-CGTCCTTACAATGCTATTGCTTTCTCTGGTCC 165556 ||| |||||||| ||||| ||||| |||||||| || Sbjct 70422 AATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 111 bits (122), Expect = 2e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 ||||| || || | || ||||| || || || || | || |||| | |||| Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTGCA 22738 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAA--GTCTG--GACGAATGGCT 164196 ||||| ||| ||||||| ||||| || |||||||| | ||| | || |||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 164197 CTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTA 164256 |||| |||||||||| |||| |||| | |||||| | |||| | | ||| Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 164257 CATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATT 164308 |||||||||||||||||||||| || |||| | ||||||| ||||||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATT 22910 >seq407 Length=272206 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 165645 TTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATG 165704 || ||||| | ||||| | ||||| || ||||| |||||| |||| | ||||| ||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 165705 ATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTA 165764 ||||| || || ||| | ||||| | || ||||| | ||| ||| |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 165765 GAGAATACTTTGTATGAAGATGGTGA 165790 || |||||||| | |||||||||||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557593364725920