Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq194 188 9e-43 seq471 120 4e-22 seq116 98.7 1e-15 >seq194 Length=269275 Score = 188 bits (208), Expect = 9e-43 Identities = 238/326 (73%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 179313 TTTGGAGTTGCA-GCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGAC 179371 ||||| || ||| || || || || ||| | ||||| | || || || || || ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 179372 GCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGC 179431 | | ||||| || || |||||||| || || ||| | | || | || ||||| ||||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 179432 CATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATT 179491 |||||||||||||| || || || || | |||||||| |||| |||||||||| Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 179492 CAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTT 179551 | || || | || || |||| || || || ||||| |||||||| || ||||| || Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 179552 CTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTT 179611 ||||| || |||||||| | || || ||||| |||||| |||||||||||||||| Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 179612 GTTTGTTCCTGTCATGGGTCTTTGGA 179637 ||||| || || | ||| | |||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 179118 GGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT 179177 || || || ||| ||||||| || ||||||||||| || | || |||||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 179178 CGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTC 179236 || || |||||| | || || ||| || | | |||||||| |||||||| | || || Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAATGCAATTACATTCTC 237916 Query 179237 TGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTG 179296 ||| ||||||||| | ||||| |||| || | || ||||| || | ||||| || Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTTG 237856 Query 179297 GTTCTTTG 179304 ||| |||| Sbjct 237855 GTTTTTTG 237848 >seq471 Length=100806 Score = 120 bits (132), Expect = 4e-22 Identities = 199/282 (71%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 178965 TCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCT 179024 || ||||||| ||| || | || ||| ||| | | ||| || ||||| | || ||| Sbjct 70181 TCATGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTTTAACGGCT 70240 Query 179025 GCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAA 179084 || || || | |||||| | | | | |||||| | | | || |||||||| || Sbjct 70241 GCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAA 70300 Query 179085 GCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTC 179144 || || |||||||| || ||| ||| | || || || ||| ||||||| || ||| Sbjct 70301 GCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTC 70360 Query 179145 CACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGT 179203 |||||||| |||| || |||||||||||| | | || |||||| | || || ||| || Sbjct 70361 CACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCT-GT 70419 Query 179204 CGGTATT-CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAA 179244 | ||| |||||||| ||||| || || || ||||| |||| Sbjct 70420 -GTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCCAA 70460 >seq116 Length=395782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 177751 GCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAAC 177810 ||||| || || | || || || || || ||||| | || || || | |||| Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTGCA 22738 Query 177811 GCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTC----GATGAGTGGCT 177866 ||||||||| | ||||| || || || |||||||| | || || ||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 177867 CTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATA 177926 ||||||||||||||| |||| || | | |||||| | | ||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 177927 CATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGC 177986 |||||||||||||||||||||| || ||| | ||||||| || ||||| ||| || Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Query 177987 AT 177988 || Sbjct 22919 AT 22920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596241934176960