Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq194 206 3e-48 seq407 95.1 1e-14 seq471 93.3 5e-14 seq116 86.0 7e-12 >seq194 Length=269275 Score = 206 bits (228), Expect = 3e-48 Identities = 242/326 (74%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 171068 CTTTGGAGTTGCA-GCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGA 171126 |||||| || ||| || || || || ||| | ||||| | ||||| || || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 171127 CACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTG 171186 | |||| ||||||||||||||||| ||||| ||| | | || | || ||||| | || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 171187 CAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCT 171246 | |||||||||| ||| || || |||||||| | ||||||||||||| ||||| || | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 171247 TTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTT 171306 | || ||| || | ||||| | ||||| || ||||| ||||| || ||||| || | Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 171307 TCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGC 171366 | ||||| || || ||||| | || || ||||| |||||||| |||||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 171367 TGTTTGTTCCTGTCATGGGTCTTTGG 171392 | ||||| || || | ||| | ||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGG 237241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 170874 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTT 170933 || || || |||| |||||| || |||||||| || |||| || |||||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 170934 CGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTA-GACCGTACAATGCAATCGCTTTCT 170991 || || |||||| | ||| ||| || |||| | || || |||||||| | |||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCT-GT-TCAATTACGTCCTTATAATGCAATTACATTCT 237917 Query 170992 CTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTT 171051 |||| || || ||| | ||||| | ||| | || ||||| || | ||||| ||| Sbjct 237916 CTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTT 237857 Query 171052 GGTTCTT 171058 |||| || Sbjct 237856 GGTTTTT 237850 >seq407 Length=272206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 171099 CTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCA 171158 ||||| | ||||| || || || ||||| |||| | ||||||||||||||| ||||| Sbjct 61906 CTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCC 61965 Query 171159 GGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTG 171218 ||| | | || | || ||||| | ||| ||| |||||| || | || |||||||| Sbjct 61966 GGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTA 62025 Query 171219 TATGAAGATGGTGAT 171233 | ||||||||||||| Sbjct 62026 TTTGAAGATGGTGAT 62040 >seq471 Length=100806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 170724 TGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGC 170782 ||||| | || ||| | || ||||| || | | || ||| ||||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 170783 TGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 170842 || || | ||||||| || | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 170843 TCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 170902 || || ||||| || |||| ||| | || || || |||| |||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 170903 CGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAG 170961 ||| || || | || |||||||||||| | | || |||||| | ||| ||| || | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCT-GT-G 70420 Query 170962 GGATTA-GACCGTACAATGCAATCGCTTTCTCTGGTCC 170998 |||| | || || ||||| || || |||||||| || Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAA--GTC--TCGATGAATGGTT 169620 || || ||| | ||||| || || || |||||||| | ||| | ||||||||||| Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 169621 GTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTA 169680 |||| |||||||||| |||| |||| | |||||| | | || | | ||| Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 169681 CATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGC 169740 ||||||||||||||||||| | | ||| ||||||||| |||||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592133583885120