Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7758 129 1e-24 seq853 123 5e-23 seq83 102 2e-16 seq876 100 6e-16 seq724 98.7 2e-15 seq622 98.7 2e-15 seq453 98.7 2e-15 seq448 98.7 2e-15 seq180 98.7 2e-15 seq91 98.7 2e-15 seq85 98.7 2e-15 seq312 95.1 3e-14 seq547 93.3 9e-14 seq511 86.0 1e-11 >seq7758 Length=1097 Score = 129 bits (142), Expect = 1e-24 Identities = 374/563 (66%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 230085 GAACGAGCTTTTTGATGCCATTGAAAACAT-CCCGGCGGTTCAT-AACAAGGCAAAGTGG 230142 |||| ||||||| |||| || || | ||| ||| ||| ||| || ||||| ||||| Sbjct 660 GAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCG--TCACGAAGAAGGCCCAGTGG 603 Query 230143 GCTCAGAAATGGCTAGAACCTGGTAA--ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGT 230200 || | ||| | || | | | | ||||||||| ||||| |||| |||| | | Sbjct 602 GCCCTACGCTGGATCGA--CGGCTCAGAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTT 545 Query 230201 GTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAG 230260 | || ||||| || | || || |||||||| ||||| || |||||||| ||| | Sbjct 544 GCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCTAAAGAAGCGCG 485 Query 230261 GTGTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCA 230318 | | |||||||| || || ||| | |||||||| ||| || || |||||| | || Sbjct 484 GGTTAATGCCTGGACTGACGTTCT--CAAACGAGTTGATCTCGCGAGATGAGGGTTTGCA 427 Query 230319 TCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| |||| || ||| ||| ||||| || || Sbjct 426 CTGCGACTTCG-CGTGCTTGCTGTACTCGCTGCTGAGGAAGAAGCTGAGCGAGGATCGGG 368 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | || ||||| | | || || || | || | |||||| | || || || | | Sbjct 367 TGAAGTCGATCATACGAAACGCGGTGGAGATAGAGAGAGAGTTCGTGTGCGAAGCGTTAC 308 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || ||| | || ||||||| || || ||| | ||||||||||| ||||| || | Sbjct 307 CGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGCCAGTACATCGAGTTCGTGGCGG 248 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 | | | | | || ||||| |||| ||| ||||||| ||||||| || | || Sbjct 247 ATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAATGTGCAGAACCCGTTCGAAT 188 Query 230558 TTATGGAGCTCATTTCGCTT-CAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 |||||||| || |||| || ||||||||||| |||||||| ||| | || | || Sbjct 187 GGATGGAGCTGATCA-GCTTGCAGGGGAAGACCAATTTCTTCGAGAAGAGGGTTGGGGAG 129 Query 230617 TATCAGAGGCCTGGTGTGATGAA 230639 || |||| | || |||||||| Sbjct 128 TACCAGAAGGCTTCAGTGATGAA 106 >seq853 Length=703183 Score = 123 bits (136), Expect = 5e-23 Identities = 373/563 (66%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 230085 GAACGAGCTTTTTGATGCCATTGAAAACAT-CCCGGCGGTTCAT-AACAAGGCAAAGTGG 230142 |||| ||||||| |||| || || | ||| ||| ||| ||| || ||||| ||||| Sbjct 573796 GAACAGGCTTTTTCATGCGATCGATACCATTCCCTGCG--TCACGAAGAAGGCCCAGTGG 573739 Query 230143 GCTCAGAAATGGCTAGAACCTGGTAA--ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGT 230200 || | ||| | || | | | | ||||||||| ||||| |||| |||| | | Sbjct 573738 GCCCTACGCTGGATCGA--CGGCTCAGAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTT 573681 Query 230201 GTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAG 230260 | || ||||| || | || || |||||||| ||||| || |||||||| ||| | Sbjct 573680 GCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCTAAAGAAGCGCG 573621 Query 230261 GTGTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCA 230318 | | |||||||| || || ||| | |||||||| ||| || || |||||| | || Sbjct 573620 GGTTAATGCCTGGACTGACGTTCT--CAAACGAGTTGATCTCGCGAGATGAGGGTTTGCA 573563 Query 230319 TCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| |||| || ||| ||| ||||| || || Sbjct 573562 CTGCGACTTCG-CGTGCTTGCTGTACTCGCTGCTGAGGAAGAAGCTGAGCGAGGATCGGG 573504 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | || ||||| | | || || || | || | |||||| | || || || | | Sbjct 573503 TGAAGTCGATCATACGAAACGCGGTGGAGATAGAGAGAGAGTTCGTGTGCGAAGCGTTAC 573444 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || ||| | || ||||||| || || ||| | ||||||||||| ||||| || | Sbjct 573443 CGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGCCAGTACATCGAGTTCGTGGCGG 573384 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 | | | | | || ||||| |||| ||| ||||||| ||||||| || | | Sbjct 573383 ATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTACAATGTGCAGAACCCGTTCGAGT 573324 Query 230558 TTATGGAGCTCATTTCGCTT-CAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 |||||||| || |||| || ||||||||||| |||||||| ||| | || | || Sbjct 573323 GGATGGAGCTGATCA-GCTTGCAGGGGAAGACCAATTTCTTCGAGAAGAGGGTTGGGGAG 573265 Query 230617 TATCAGAGGCCTGGTGTGATGAA 230639 || |||| | || |||||||| Sbjct 573264 TACCAGAAGGCTTCAGTGATGAA 573242 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 302943 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 302884 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 302883 GCCCCACGGTGGGC 302870 >seq83 Length=693613 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 546991 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 547050 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 547051 GCCCCACGGTGGGC 547064 >seq876 Length=218746 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 27121 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27180 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 27181 CCCCACGGTGGGC 27193 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 27305 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27364 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 27365 CCCCACGGTGGGC 27377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 26938 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26997 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26998 CCCACGGTGGGC 27009 >seq724 Length=765411 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 323260 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 323201 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 323200 CCCACGGTGGGC 323189 >seq622 Length=324347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 204092 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 204151 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 204152 CCCACGGTGGGC 204163 >seq453 Length=1162932 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 517480 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 517421 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 517420 CCCACGGTGGGC 517409 >seq448 Length=743520 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 293071 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 293012 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 293011 CCCACGGTGGGC 293000 >seq180 Length=763618 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 68637 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68696 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 68697 CCCACGGTGGGC 68708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 91794 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 91853 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 91854 CCCACGGTGGGC 91865 >seq91 Length=477523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 291098 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 291157 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 291158 CCCACGGTGGGC 291169 >seq85 Length=381299 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 126155 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 126096 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 126095 CCCACGGTGGGC 126084 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 126285 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 126344 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 126345 CCCACGGTGGGC 126356 >seq312 Length=580599 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| || || |||| || |||||||||||||||||||| Sbjct 456915 CCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 456856 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 456855 CACGGTGGGC 456846 >seq547 Length=418891 Score = 93.3 bits (102), Expect = 9e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||| | || || || | || || ||| | || ||||||| || || ||| | Sbjct 380741 GAGTTCGTGTGCGAAGCGTTACCGTGCGCCCTGGTGGGGATGAACGGCGATCTAATGAGC 380682 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || || | | | | || ||||| |||| ||| ||||| Sbjct 380681 CAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGCTGAGCTTGGGTACGGGAAGATGTAC 380622 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTT-CAAGGGAAGACCAACTT 230594 || ||||||| || | || |||||||| || |||| || ||||||||||| || Sbjct 380621 AATGTGCAGAACCCGTTCGAATGGATGGAGCTGATCA-GCTTGCAGGGGAAGACCAATTT 380563 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||| ||| | || | || || |||| | || |||||||| Sbjct 380562 CTTCGAGAAGAGGGTTGGGGAGTACCAGAAGGCTTCAGTGATGAA 380518 >seq511 Length=1429300 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| ||||| || | || || |||| || |||||||||||||||||| Sbjct 1190123 GCCCGTCTAGCTCAGTTGGTAGTGC-CAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1190181 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1190182 CCCACGGTGGGC 1190193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057686460401240