Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7758 136 4e-27 seq853 136 4e-27 >seq7758 Length=1097 Score = 136 bits (150), Expect = 4e-27 Identities = 383/586 (65%), Gaps = 9/586 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||| ||||| || || ||||| |||| ||| | ||||| || | Sbjct 404 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 463 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || ||||||| ||||||||||||| || ||| | Sbjct 464 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCG 523 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TC-GCGT 17132 | |||||||| || || ||| | ||||| || | | || || || ||| || | | Sbjct 524 AGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGC 583 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 | | | ||||| | |||||| ||| || | | | | ||| || || | Sbjct 584 CGTCG------ATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTAT 637 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | || || | ||| | | | || || | | ||| | || || || || | ||| | Sbjct 638 CGATCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGA 697 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 |||||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||| | Sbjct 698 GGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAG 757 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | || | | || |||||| ||| | | | || ||||| || || ||||||| Sbjct 758 CCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGT 817 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || ||||| || || | | || | ||||| | || ||| | || | |||| Sbjct 818 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAA 877 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| || || | | ||| ||| || || |||| |||||| || ||| Sbjct 878 GTTCCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCT 937 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| || ||||| | ||| || || |||||| || ||||| Sbjct 938 CGGCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAA 983 >seq853 Length=703183 Score = 136 bits (150), Expect = 4e-27 Identities = 383/586 (65%), Gaps = 9/586 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||| ||||| || || ||||| |||| ||| | ||||| || | Sbjct 573540 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 573599 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || ||||||| ||||||||||||| || ||| | Sbjct 573600 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCG 573659 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TC-GCGT 17132 | |||||||| || || ||| | ||||| || | | || || || ||| || | | Sbjct 573660 AGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGC 573719 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 | | | ||||| | |||||| ||| || | | | | ||| || || | Sbjct 573720 CGTCG------ATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTAT 573773 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | || || | ||| | | | || || | | ||| | || || || || | ||| | Sbjct 573774 CGATCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGA 573833 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 |||||||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||| | Sbjct 573834 GGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAG 573893 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | || | | || |||||| ||| | | | || ||||| || || ||||||| Sbjct 573894 CCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGT 573953 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | || ||||| || || | | || | ||||| | || ||| | || | |||| Sbjct 573954 CAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAA 574013 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| || || | | ||| ||| || || |||| |||||| || ||| Sbjct 574014 GTTCCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCT 574073 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| || ||||| | ||| || || |||||| || ||||| Sbjct 574074 CGGCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAA 574119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517479949340640