Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq486 145 1e-29 seq2255 122 1e-22 seq176 116 6e-21 >seq486 Length=243247 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || ||||| ||| | ||| | || | Sbjct 19788 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCA 19729 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || |||||||| || ||||| || |||||||| ||| Sbjct 19728 GATACCATAGACAATGTGAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 19669 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||||||||| || | |||||| | | || || | |||||||||| Sbjct 19668 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAT 19609 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||||||||| | ||| | || || | ||||| || Sbjct 19608 ATCCAGAAGGAATCTACTTTGCATCTTGTTCTTCGACTAAGGGGTGGGAT 19559 Score = 131 bits (144), Expect = 3e-25 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAA---CTATAGAGATTGAAGCA 124595 |||||| ||||| | ||||| | || || || ||||| | || | ||| | || | Sbjct 19560 ATGCAAGTATTTGTCAAGACTTTGACTGGAAAGACTATCATCACTCTGGAGGTGGAGGGT 19501 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| || ||| | || ||| ||||||||||||||||| || || ||||| Sbjct 19500 TCGGATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGAC 19441 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || ||||| |||||||| ||||| || |||||||| || | || | | |||||| Sbjct 19440 CAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTAT 19381 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| || |||||| | ||| | ||||| ||||||||||| Sbjct 19380 AACATCCAGAAGGAATCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGGTAT 19328 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || ||||| || || ||| | || | || ||| Sbjct 19329 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTC- 19271 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || |||||||| || ||||| || |||||||| || Sbjct 19270 TGATACCATAGACAATGTGAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCA 19211 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 |||||||||||||||||||||||| || | |||||| Sbjct 19210 ACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGAT 19174 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 ||| | || || ||||| ||||||||||| || || || ||||| ||| | || || || Sbjct 20416 ATTAAGGACAAGGAAGGGATACCACCTGAGCAGCAGAGTCTTATCTTTTCTGGGAAGAAA 20357 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | |||||| || | || | | ||| ||| | || || |||||||| || |||||||| Sbjct 20356 CTTGAGGATGGTAGGACGCTGGCAGACTATGACATCCAGAAAGAATCCGCTCTGCATTTG 20297 Query 124746 GTTTTACGTTTACGAGGTGGTAT 124768 || | |||||| | ||||| || Sbjct 20296 ATTCTTCGTTTAAGGGGTGGCAT 20274 >seq2255 Length=141741 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || ||||| | ||| ||||| Sbjct 140243 ATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAAAGCTCG 140184 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || |||||||| ||||| ||||| || || || || || Sbjct 140183 GATACCATAGATAATGTCAAGGCAAAAATTCAGGATAAGGAAGGCATTCCCCCGGACCAG 140124 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || || || | |||||| | || || | | |||||||| Sbjct 140123 CAGAGGCTAATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCTGATTATAAC 140064 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||||||||| |||| | || || || |||||||| Sbjct 140063 ATCCAAAAGGAATCAACTTTGCACCTGGTGCTTCGGTTGCGTGGTGGTAT 140014 Score = 109 bits (120), Expect = 8e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 140472 AATGCAAATATTTGTTAAGACTCTCACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTC 140413 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| |||| | || || || ||||| ||||| || || ||||| || | Sbjct 140412 C-GACACGATTGATAATGTCAAGGCTAAGATCCAAGACAAAGAGGGCATCCCACCAGACC 140354 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || || || | |||||| | || || | | ||||| | Sbjct 140353 AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACA 140294 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| |||||||| | || || || | ||| | || || ||||| Sbjct 140293 ATATTCAAAAGGAATCAACCCTTCACTTAGTGCTTCGTCTTCGTGGGGGTAT 140242 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | ||||| || || || || || || || | || ||||| || | Sbjct 95815 ATGCAAATCTTTGTCAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCA 95874 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || || || || || || || || || || || || Sbjct 95875 -GATACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 95933 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || || || || | |||||| | || || | | || ||||| Sbjct 95934 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTATAA 95993 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| |||| ||||| | || | || |||||||| Sbjct 95994 CATCCAAAAAGAATCGACTCTGCACTTGGTGCTCCGGCTGCGTGGTGGTAT 96044 >seq176 Length=136227 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || ||||| || ||| | ||| | || ||| Sbjct 89073 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 89014 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || || ||||| || || ||||| || || ||||| Sbjct 89013 -GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 88955 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || || ||||||||||| || | || | | ||||| || Sbjct 88954 GCAGAGGCTTATCTTCGCCGGTAAGCAATTAGAGGACGGTAGGACCCTTGCGGATTACAA 88895 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||| |||||| | ||| | |||||||||| Sbjct 88894 CATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGGTAT 88844 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || ||||| || || || ||||| |||| | || ||| Sbjct 89301 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAGACAATAACCCTAGAAGTCGAGAGCTC- 89243 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | || || || |||||||| || || || || || || || Sbjct 89242 TGATACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCA 89183 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||| |||||||| ||||| ||||| | ||||| | | || || || Sbjct 89182 GCAGAGGTTGATTTTCGCAGGAAAGCAATTGGAGGACGGCCGAACCCTCGCCGACTACAA 89123 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||||||||| || ||| | || || |||||||||| Sbjct 89122 CATCCAAAAGGAATCAACTTTGCACTTAGTTCTTCGATTGAGAGGTGGTAT 89072 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 88617 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTC- 88559 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || |||||||| || || || || ||||| || || Sbjct 88558 TGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGGATCCCACCGGACCA 88499 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || ||||| | |||||| |||| || | | ||||||||| Sbjct 88498 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 88439 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || ||| | ||| | || | ||| | || |||||| Sbjct 88438 TATCCAGAACGAGTCCACTCTCCATCTTGTCCTTCGTCTGCGTGGTGGT 88390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755360170406400