Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq736 118 1e-21 seq2255 114 1e-20 seq297 96.9 4e-15 seq49 86.0 7e-12 seq2073 82.4 9e-11 >seq736 Length=481145 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | || |||||| || || ||||| || || || || || | Sbjct 406945 ACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCC 407004 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| ||||||||||| || ||||| ||||| |||||||| || | || | || |||||| Sbjct 407005 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATGCCCTCCTT 407064 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | ||||| || ||||| || | |||| Sbjct 407065 GTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGA 407123 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || || || || ||||||||||| Sbjct 407124 TGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || || ||||||||||||| | || || | ||||||||| || || Sbjct 405829 CTCCTTCTGAATGTTATAGTCAGCCAGAGTCCTTCCATCCTCCAACTGCTTACCGGCAAA 405888 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 405889 GATCAACCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 405947 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | |||||||| || || || | |||| Sbjct 405948 TGTCGATTGTGTCCGAGCTC---TCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCT 406004 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 406005 TCACAAAGATCTGCAT 406020 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 406057 CTCCTTCTGAATATTGTAGTCAGCCAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAA 406116 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 406117 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 406176 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | ||||| || || || || || ||||| Sbjct 406177 GTCGATGGTGTCCGAGCTC---TCGACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTT 406233 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 406234 CACGAAGATCTGCAT 406248 >seq2255 Length=141741 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||||||||||||||| || || | || || |||||||| ||||| || Sbjct 140281 TCCTTTTGAATATTGTAATCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 140340 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | ||||||||| | || | || ||| ||||| ||| || |||| | Sbjct 140341 ATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTAGCCTTGACATTA 140400 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | |||||| |||| || || || | |||||||| || || || || ||||| Sbjct 140401 TCAATCGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTA 140457 Query 43170 ACAAAGATTTGCATT 43184 ||||| ||||||||| Sbjct 140458 ACAAATATTTGCATT 140472 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 96462 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAA 96403 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 96402 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 96344 Query 43111 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | ||| ||||| ||||| || || |||| Sbjct 96343 TATCAATTGTATC---CGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCT 96287 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 96286 TCACAAAGATCTGCAT 96271 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| || || ||||| || || || ||||| || || || | || || Sbjct 96024 CACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 95965 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||||||||| ||||| | ||||||||| | || | || |||||||||| Sbjct 95964 AAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 95905 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 95904 GATCTTTGCCTTGACATTGTCAATGGTATCTGAGCT---TTCAACTTCCAAGGTGATTGT 95848 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||||||||| Sbjct 95847 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 95815 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | ||||| ||||| || |||||||| || || |||||||| || || || Sbjct 140026 AACCGAAGCACCAGGTGCAAAGTTGATTCCTTTTGGATGTTATAATCAGCAAGGGTGCGG 140085 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || ||||||||||||||||| || || | ||||||||| | || | || ||| Sbjct 140086 CCATCCTCAAGCTGCTTACCAGCGAAGATTAGCCTCTGCTGGTCCGGGGGAATGCCTTCC 140145 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGAC 43141 || ||| ||| |||||| |||| | | | || || ||| ||| || || | Sbjct 140146 TTATCC-TGAATTTTTGCCTTGACATTATCTATGGTATCCGAGCT---TTCAACCTCCAA 140201 Query 43142 CGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || || || ||||| |||||||||||||| Sbjct 140202 GGTTATCGTCTTCCCAGTAAGTGTCTTGACAAAGATTTGCAT 140243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 139596 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCCGCAAA 139655 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | |||||||| | || | || |||||||||| ||| | || | ||| | Sbjct 139656 GATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 139714 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 139715 TATCAATGGTATCAGAACTC---TCCACCTCCAGAGTTATCGTCTTCCCAGTGAGGGTCT 139771 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 139772 TCACAAAGATCTGCAT 139787 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| |||||||||||| ||||| ||||| || |||| |||| || Sbjct 96252 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCGTCCTC 96193 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 96192 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 96133 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 |||||| || | | | | || || ||| |||||| || | || ||||| Sbjct 96132 GATTTTGGCCTTCACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 96076 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || ||||| || ||||| Sbjct 96075 TTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| || || | ||| |||||| || || ||||| || || || || || | || || Sbjct 95796 CACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 95737 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| ||||||||||| | || | | |||||||||| Sbjct 95736 AAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 95677 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 95676 GATCTTTGCCTTGACATTGTCAATAGTATCCGAGCT---TTCAACTTCCAAGGTGATTGT 95620 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 95619 CTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 95587 >seq297 Length=529300 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 439836 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 439777 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 439776 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 439717 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 439716 TCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 439657 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 439656 AAGATCTGCATGTTTGCG 439639 >seq49 Length=410483 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || || || ||||||| || || | || || |||||||| ||||| || Sbjct 303009 CCTTTCTGGATGTTATAGTCAGCCAAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAA 302950 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 302949 ATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 302890 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| || || |||| |||||||| || || ||||| ||||| || Sbjct 302889 TCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTCTTCACG 302830 Query 43173 AAGATTTGCATTTT 43186 || || ||||| || Sbjct 302829 AAAATCTGCATCTT 302816 >seq2073 Length=156458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 8386 AAAAATTTGCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 8327 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 8326 TTACCACTATACTAC 8312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571745064937440