Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1231 104 3e-17 seq113 104 3e-17 seq486 89.7 8e-13 >seq1231 Length=361431 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || || ||||| || | || || || ||| || || |||||||| Sbjct 154353 GTTCCTCCCCTCAGCCTCAAAACCAAGTGAAGTGTTGACTCCTTTTGA-ATGTTATAATC 154411 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || |||||||| | ||| || ||||| || ||||||||||||||||| || || || || Sbjct 154412 TGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGGTCAGG 154471 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| ||||| || Sbjct 154472 AGGGATGCCTTCCTTATCCTG 154492 >seq113 Length=202937 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || || || || || ||||||||| Sbjct 28784 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCT 28843 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| ||||| || ||| Sbjct 28844 GCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGA 28903 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 28904 GGGATGCCTTCCTTATCCTG 28923 >seq486 Length=243247 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| || || ||||| || || |||||||| | ||| || || | ||| |||| || Sbjct 19354 ATGCAAGGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTCCTACCATCCTCTAGCTG 19413 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| | || ||||| || ||||| ||||||||||||||||| Sbjct 19414 CTTTCCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCTTTATCTTG 19467 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || |||| | || | ||| ||||||||||| || ||||||||||||| Sbjct 19562 CCACCCCTTAGTCGAAGAACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCTGCC 19621 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| |||| ||| || | || ||||| |||||||| | ||||| || || || || Sbjct 19622 AAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTGGG 19681 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 19682 ATCCCTTCCTTGTCTTG 19698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743432083676160