Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7758 158 2e-33 seq853 158 2e-33 seq174 82.4 1e-10 >seq7758 Length=1097 Score = 158 bits (174), Expect = 2e-33 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||||| |||||| |||| || || ||||| || | Sbjct 404 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 463 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 |||| ||||| ||||||| || ||||| || ||||||||||| | || || | || Sbjct 464 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 522 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || ||||||||| | | || | |||| || || || Sbjct 523 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 580 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 581 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 640 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 641 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 700 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 701 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 760 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | ||| ||||| | || | | | || | ||| || || || || ||| Sbjct 761 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 820 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | || ||| | || | ||| | Sbjct 821 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 880 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | || | ||| ||| || || || | ||||| || || ||||| | Sbjct 881 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 940 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 941 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 987 >seq853 Length=703183 Score = 158 bits (174), Expect = 2e-33 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||||| |||||| |||| || || ||||| || | Sbjct 573540 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 573599 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 |||| ||||| ||||||| || ||||| || ||||||||||| | || || | || Sbjct 573600 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 573658 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || ||||||||| | | || | |||| || || || Sbjct 573659 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 573716 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 573717 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 573776 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 573777 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 573836 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 573837 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 573896 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | ||| ||||| | || | | | || | ||| || || || || ||| Sbjct 573897 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 573956 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | || ||| | || | ||| | Sbjct 573957 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 574016 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | || | ||| ||| || || || | ||||| || || ||||| | Sbjct 574017 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 574076 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 574077 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 574123 >seq174 Length=291255 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||| || | ||| |||| ||| || | ||||| | || | | || Sbjct 140428 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 140487 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | | ||| || | || || | ||| || || || || | || | ||| | Sbjct 140488 GTAGGTTTGGAGAGCAGACGCAATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 140546 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||| || ||||| ||||| || | |||| || || | |||||| | || | Sbjct 140547 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 140606 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||| |||| || ||| |||| ||| ||||| || Sbjct 140607 GAGTTTTAAAACCAAAGTAGTCATAATCAAAATCTCTTTCATAAATGAT 140655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629737707637440