Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq736 93.3 4e-14 seq2255 89.7 5e-13 seq486 84.2 2e-11 >seq736 Length=481145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| || || || |||| ||||| |||||||| ||||| ||||| || || Sbjct 407005 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATGCCCTCCTT 407064 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| | | ||||||||||| ||| | Sbjct 407065 GTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGAT 407124 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 407125 GGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| |||||||| || ||||||||||| || | Sbjct 405794 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAGTCAGCC 405853 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||| ||||| ||| |||||| | ||||| || ||||| Sbjct 405854 AGAGTCCTTCCATCCTCCAACTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 405913 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 405914 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACC 405973 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || || || || |||||| Sbjct 405974 TCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATA 406021 >seq2255 Length=141741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||||||| || || || |||||||| || ||||| | Sbjct 140245 CCCCCACGAAGACGAAGCACTAAGTGAAGGGTTGATTCCTTTTGAATATTGTAATCAGCC 140304 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||| || | ||||| || || || Sbjct 140305 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 140364 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 140365 ATGCCCTCTTTGTCTTGGATCTTAGCCTTGACATTATCAATCGTGTCGGAGCTCTCAACC 140424 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||| | || || || ||||||||||| Sbjct 140425 TCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACAAATATTTGCAT 140471 >seq486 Length=243247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| || | ||| | ||| | ||||| || || || ||||| |||||| | Sbjct 20049 CCACCCCTTAATCGAAGAACAAGGTGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGCC 20108 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||| || |||||| | || || | ||||| || || || Sbjct 20109 AAAGTCCTACCATCTTCCAACTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGCGGA 20168 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || || || || || || | || || || | | || | ||||| | | |||||| Sbjct 20169 ATCCCCTCCTTATCC-TGTATCTTAGTCTTGACAATATCAATAGTGTCCGAGCTCTCCAC 20227 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| || ||||||||||| | ||||| || ||||| ||||| Sbjct 20228 CTCAAGGGTGACAGTCTTGCCGGTAAGGGTTTTCACAAATATCTGCAT 20275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496001074281600