Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7758 167 3e-36 seq853 167 3e-36 seq174 87.8 3e-12 >seq7758 Length=1097 Score = 167 bits (184), Expect = 3e-36 Identities = 393/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||| |||||||||| |||||| |||| || | ||||| || | Sbjct 404 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 463 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 |||| ||||| ||||||| || ||||| || ||||||||||| | ||| ||| ||| Sbjct 464 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 522 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT- 50129 || ||||| || ||||| || |||||||| || | || | |||| || | || Sbjct 523 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 580 Query 50130 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 581 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 640 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 641 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 700 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || || ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 701 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 760 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| | ||| ||||| | || | | | || | ||| || || || |||||| Sbjct 761 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 820 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || || | || || | || || || || ||| ||| | ||| | Sbjct 821 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 880 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | || | ||| ||| || || || | ||||| || || ||||| | Sbjct 881 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 940 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 941 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 987 >seq853 Length=703183 Score = 167 bits (184), Expect = 3e-36 Identities = 393/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||| |||||||||| |||||| |||| || | ||||| || | Sbjct 573540 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 573599 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 |||| ||||| ||||||| || ||||| || ||||||||||| | ||| ||| ||| Sbjct 573600 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 573658 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT- 50129 || ||||| || ||||| || |||||||| || | || | |||| || | || Sbjct 573659 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 573716 Query 50130 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 573717 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 573776 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 573777 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 573836 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || || ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 573837 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 573896 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| | ||| ||||| | || | | | || | ||| || || || |||||| Sbjct 573897 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 573956 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || || | || || | || || || || ||| ||| | ||| | Sbjct 573957 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 574016 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | || | ||| ||| || || || | ||||| || || ||||| | Sbjct 574017 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 574076 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 574077 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 574123 >seq174 Length=291255 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || ||||||| ||| |||| |||||| || | ||||| | ||| ||||| | ||| Sbjct 139529 TCACCCCAAAGATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTTCCCA 139588 Query 79930 TCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 ||| | | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 139589 TCACCTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTC 139646 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||| || | ||| |||| ||| || | ||||| | |||| | || Sbjct 140428 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 140487 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | | ||| || | || || | ||| || || || || | || | ||| | Sbjct 140488 GTAGGTTTGGAGAGCAGACGCAATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 140546 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||| || ||||| || ||||| | ||||| || || | ||| || | || | Sbjct 140547 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 140606 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||||||||| |||| || ||| |||| ||| ||||| || Sbjct 140607 GAGTTTTAAAACCAAAGTAGTCATAATCAAAATCTCTTTCATAAATGAT 140655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718177687602720