Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7758 158 2e-33 seq853 158 2e-33 seq174 91.5 2e-13 >seq7758 Length=1097 Score = 158 bits (174), Expect = 2e-33 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||||| ||||||||||| || || ||||| || | Sbjct 404 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 463 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| | || Sbjct 464 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 522 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 || ||||| || ||||| || |||||||| | | || | |||| || || || Sbjct 523 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 580 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 581 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 640 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 641 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 700 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || ||||| ||||| || |||||||| || |||| Sbjct 701 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 760 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| ||||| ||||| | || | | | || | ||| || || || |||||| Sbjct 761 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 820 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||| || || || || | || || | || || | || ||| | || | || | Sbjct 821 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 880 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | || | ||| ||| || || || | ||||| || || || || | Sbjct 881 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 940 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 |||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 941 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 987 >seq853 Length=703183 Score = 158 bits (174), Expect = 2e-33 Identities = 391/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||||| ||||||||||| || || ||||| || | Sbjct 573540 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATCAACTCGTTTGAGA 573599 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| | || Sbjct 573600 ACGTCAGTCCAGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTCCCC 573658 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 || ||||| || ||||| || |||||||| | | || | |||| || || || Sbjct 573659 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 573716 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 573717 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 573776 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||| ||| || ||| || || | || || | || || || | | || | Sbjct 573777 TCGCATGAAAAAGCCTGTTCTTCTCGTCTGAGTCCTTGATGTAGGTCTCCAGGAGGAGGC 573836 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || ||||| ||||| || |||||||| || |||| Sbjct 573837 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCTCGAGCCT 573896 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| ||||| ||||| | || | | | || | ||| || || || |||||| Sbjct 573897 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACAATGCCGTCAG 573956 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||| || || || || | || || | || || | || ||| | || | || | Sbjct 573957 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCGGGGGCTAGAAGTT 574016 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| | | || | ||| ||| || || || | ||||| || || || || | Sbjct 574017 CCCAGTGGCGTAGGTCCTGGCATAAATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 574076 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 |||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 574077 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 574123 >seq174 Length=291255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||| || | ||| |||| ||| || | ||||| | |||| | || Sbjct 140428 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 140487 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | | ||| || | || || | ||| ||||| || || | || | ||| | Sbjct 140488 GTAGGTTTGGAGAGCAGACGCAATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 140546 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| ||||| || ||||| || ||||| | ||||| || || | |||||| | || | Sbjct 140547 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 140606 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||| |||| || ||| |||| ||| ||||| || Sbjct 140607 GAGTTTTAAAACCAAAGTAGTCATAATCAAAATCTCTTTCATAAATGAT 140655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 || |||||| || |||| |||||| ||||| ||||| | ||| ||||| | ||| Sbjct 139529 TCACCCCAAAGATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTTCCCA 139588 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 ||| | | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 139589 TCACCTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTC 139646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671054065992480