Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2255 96.9 3e-15 seq176 91.5 1e-13 seq297 87.8 1e-12 >seq2255 Length=141741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || || | || || || || ||||| || ||||| |||||||| || Sbjct 96269 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 96210 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || |||| || | || ||||| || | ||||| | || ||||| ||| Sbjct 96209 AGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 96150 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| |||||| ||| ||| | || || ||||| |||| || Sbjct 96149 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACT 96090 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 96089 TCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCATA 96042 >seq176 Length=136227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | |||||| || | || || || ||||| |||||||| ||| Sbjct 89075 CCACCTCTCAATCGAAGAACTAAGTGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGGCG 89134 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || ||||| || || ||| | ||||| | || ||||| || Sbjct 89135 AGGGTTCGGCCGTCCTCCAATTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGG 89194 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| || | || |||||||| | || || Sbjct 89195 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGACT 89254 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| || || || || || || ||||| || || ||||||||| Sbjct 89255 TCTAGGGTTATTGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCATA 89302 >seq297 Length=529300 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||||||| ||| ||| |||| || | || Sbjct 439848 TGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGC 439789 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | || || ||||| ||||| || || ||||| || ||| Sbjct 439788 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 439729 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || || |||| ||||||||| ||||| || Sbjct 439728 GCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTT 439669 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 439668 AGGGTTTTCACGAAGATCTGCATGTTTG 439641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362134406129268