Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2255 93.3 3e-14 seq176 89.7 4e-13 seq486 84.2 2e-11 >seq2255 Length=141741 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||| ||||| || || | || | | ||||| Sbjct 139806 CACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTTCCATCCTC 139865 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| |||| | |||||||| || || | ||||| ||||| Sbjct 139866 CAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 139925 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||||| || || | | | | ||||| ||| || ||| ||| | ||||| || Sbjct 139926 GATTTTAGCCTTCACATTGTCAATAGTAT---CAGAGCTTTCCACTTCCAAAGTAATTGT 139982 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| |||||||| Sbjct 139983 CTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 140015 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||| ||||| || || | || | ||||||| Sbjct 96252 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCGTCCTC 96193 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || | |||||||| || ||| | ||||| ||||| Sbjct 96192 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 96133 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||||| || || | | | ||||| ||| || ||| ||| | |||||||| Sbjct 96132 GATTTTGGCCTTCACATTATCAATAGTAT---CAGAGCTTTCCACTTCCAGAGTAATGGT 96076 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | |||||| ||||| || ||||| Sbjct 96075 TTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 >seq176 Length=136227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || ||||||||||| | || | ||||||| Sbjct 88865 ACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCTACCGTCCTCT 88924 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || | ||||| ||||||||||| ||| | ||||| ||||| Sbjct 88925 AATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGG 88984 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | |||||| ||| || | ||||| ||||| Sbjct 88985 ATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACCTCCAGAGTAATTGTTTTC 89044 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||||| ||||| ||||| Sbjct 89045 CCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq486 Length=243247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| |||||||| || || || || ||||| |||| || ||||||| Sbjct 17898 CACTAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCGTCCTC 17957 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || ||| |||| || |||||||||||| || | ||||||||||| Sbjct 17958 AAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGGGAAACCCTCTTTGTCTTG 18017 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | | ||||| | || || | || || || || Sbjct 18018 GATTTTAGCTTTCACATTGTCAATTGTATCAGAACCATCAACATCAAGAGTGATTGTCTT 18077 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||||||||||||||| |||||| Sbjct 18078 CCCAGTCAGAGTTTTGACAAAAATCTGCATT 18108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414521526154312