Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2255 93.3 4e-14 seq736 91.5 1e-13 >seq2255 Length=141741 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||| | ||| || | | ||||||||||||| Sbjct 139585 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTG-CAAGAGTCCTCCCGTCCTCCAGCTG 139643 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | | ||||| ||| || | | ||||||||| ||| || Sbjct 139644 CTTACCCGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 139703 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | |||||||| | | |||| ||| | ||||| || || || || Sbjct 139704 AGCTTTCACATTATCAATGGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCAGT 139763 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 139764 GAGGGTCTTCACAAAGATCTGCATC 139788 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCT 48575 ||| || || || ||| |||||||||||||||||| ||||| || ||| || ||||| Sbjct 96252 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC-AAGGGTCCTTCCGTCCT 96194 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || || | |||||| || || | || ||||||||| Sbjct 96193 CGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 96134 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||| | | | || ||||| | ||| || | || ||||||| Sbjct 96133 GGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTT 96074 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||||||||| |||||||| Sbjct 96073 TCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||| || || ||| | | ||||| ||||| Sbjct 96473 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGC-AAGAGTCCTCCCATCCTCAAGCTG 96415 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || | | |||||| || || | | ||||||||| ||| || Sbjct 96414 CTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTT 96355 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || ||||| | | |||| ||| | |||||||| || || || Sbjct 96354 GGCCTTCACATTATCAATTGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGT 96295 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||| |||||||| ||||||||| Sbjct 96294 CAGAGTCTTCACAAAGATCTGCATC 96270 >seq736 Length=481145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || || |||||| || |||||||| || || Sbjct 406933 ACCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGC 406992 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | |||||||||||| || Sbjct 406993 GAGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGG 407052 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || || ||||| | | || ||||| || | |||||| Sbjct 407053 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCC 407110 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || ||||| || |||||||| || || |||||| Sbjct 407111 ACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCATC 407161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||| || || || |||||| || |||||||| || || | || | ||||| Sbjct 406723 CACTAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCCTC 406782 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | | |||||| || || | || ||||||||| Sbjct 406783 CAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 406842 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG-TCTCGACTGTTATGGTTT 48695 |||||| ||||| | ||||| |||| || | || ||||| || ||||| | Sbjct 406843 AATTTTGGCCTTGACGTTGTCAATGGTGTCGG-AGCTTTCGACCTCGAGGGTGATGGTCT 406901 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| || || || || |||||||| Sbjct 406902 TACCGGTGAGGGTCTTGACGAAGATCTGCAT 406932 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||| ||||| | || | ||||| Sbjct 406267 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTC 406326 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || | | || || | ||||| ||| || | || ||||||||| Sbjct 406327 CAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGGATACCCTCCTTGTCCTG 406386 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||||| | | ||||| || | ||| ||| | || ||||| || Sbjct 406387 GATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTGATGGTCTT 406446 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||||||||| Sbjct 406447 TCCTGTCAGGGTCTTCACAAAAATCTGCAT 406476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421199100178148