Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq38 118 6e-22 seq543 109 3e-19 seq561 105 3e-18 seq3508 104 1e-17 seq1196 102 4e-17 seq734 102 4e-17 seq721 102 4e-17 seq711 102 4e-17 seq418 102 4e-17 seq301 102 4e-17 seq5766 100 1e-16 seq2346 100 1e-16 seq2134 100 1e-16 seq1675 100 1e-16 seq1288 100 1e-16 seq291 98.7 5e-16 seq8173 84.2 1e-11 >seq38 Length=636309 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| | |||||| ||||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 158920 TTACTCAAAAATTAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 158861 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| |||| |||||||||| ||||| Sbjct 158860 ACGACGCTCTAACCAGCTGAGCTAATAGGCCG 158829 >seq543 Length=374588 Score = 109 bits (120), Expect = 3e-19 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 252434 AACAAAACAAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 252375 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||| |||| |||||||||| |||||| || Sbjct 252374 GACGCTCTAACCAGCTGAGCTAATAGGCCGTTGA 252341 >seq561 Length=136439 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| ||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 55110 AATACAAAAAGAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 55051 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 55050 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 55020 >seq3508 Length=63940 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13810 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13751 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 13750 TGAGCTAATAGGCC 13737 >seq1196 Length=284587 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 38623 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 38564 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 38563 TGAGCTAATAGGCCG 38549 >seq734 Length=195463 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 47307 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 47248 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 47247 CAGCTGAGCTAATAGGCC 47230 >seq721 Length=774050 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2248 AATAAAAGAACTA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 2305 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 2306 GACGCTCTAACCAGCTGAGCTAATAGGCC 2334 >seq711 Length=856534 Score = 102 bits (112), Expect = 4e-17 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || || || | |||| |||| |||||||| | | |||||||| ||||||||||||||| Sbjct 372996 AGGATAAAGATAAAAAGAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 372938 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 372937 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 372903 >seq418 Length=354112 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 186374 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 186433 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 186434 CAGCTGAGCTAATAGGCC 186451 >seq301 Length=499470 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 330353 AATAAAAAAATAA--TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 330296 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 330295 GACGCTCTAACCAGCTGAGCTAATAGGCC 330267 >seq5766 Length=3429 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1042 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 983 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 982 TGAGCTAATAGGCC 969 >seq2346 Length=27458 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 16025 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15966 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 15965 TGAGCTAATAGGCC 15952 >seq2134 Length=112460 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 20566 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 20507 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 20506 TGAGCTAATAGGCC 20493 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 90622 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 90563 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 90562 TGAGCTAATAGGCC 90549 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 105798 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 105739 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 105738 TGAGCTAATAGGCC 105725 >seq1675 Length=242969 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 29717 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 29776 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 29777 TGAGCTAATAGGCC 29790 >seq1288 Length=38889 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||||| |||||||||||||||||| |||||| Sbjct 37313 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATTATTAGCACGACGCTCTAACCAAC 37254 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 37253 TGAGCTAATAGGCC 37240 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| Sbjct 36099 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTAAGCTAATAGGCC 36041 >seq291 Length=671387 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | |||||||| ||||||||||||||||||||||||||||| || Sbjct 438668 AAGTTGGCCCATGCGGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 438609 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 438608 CAGCTGAGCTAATAGGCC 438591 >seq8173 Length=1188 Score = 84.2 bits (92), Expect = 1e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11457 GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACT 11516 |||||||| | | || || || ||||||||||||||||||||| ||||||| ||||||| Sbjct 792 GGCCCATGCAGGTCTCAAATCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAACT 733 Query 11517 GAGCTAATGGGCC 11529 || ||||| |||| Sbjct 732 GACCTAATAGGCC 720 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261458859095248