Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq904 136 6e-28 seq639 131 3e-26 seq699 129 9e-26 seq453 120 5e-23 seq880 104 4e-18 seq536 100 4e-17 seq343 100 4e-17 >seq904 Length=225765 Score = 136 bits (150), Expect = 6e-28 Identities = 192/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| | || || ||||||||||||| || ||||||||||| || || Sbjct 156894 GCCAAACGACATCGCA-AGGTCCTCAGAGATAACATCCAGGGCATCACCAAGCCTGCGAT 156836 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||| | ||||| || |||||| || ||| || |||| || |||| Sbjct 156835 TCGTCGTCTGGCTCGCAGAGGTGGTGTGAAGCGTATCAGTGGTCTGATCTACGAGGAGAC 156776 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||| || ||| || || | |||||| | || || || Sbjct 156775 CAGAGGCGTCCTCAAGATCTTTCTTGAGAATGTGATTCGTGATGCAGTGACTTACACTGA 156716 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| ||| |||||||| | || ||||| ||||| | || || Sbjct 156715 GCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTGGTGTATGCTTTGAAGAGGCAGGG 156656 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||||||||| |||| Sbjct 156655 AAGGACCCTCTATGGTTTTGGGGGTTA 156629 >seq639 Length=266865 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || |||||||| |||||| | || || || Sbjct 163390 GATAACATCCAGGGCATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGGGGCGGCGTG 163331 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| |||| || | |||||||||||| | Sbjct 163330 AAGCGTATCAGTGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTCGAA 163271 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || ||| | ||| || |||||||| | |||||||| ||| || Sbjct 163270 AATGTGATCCGAGACGCTGTGACCTACACAGAGCACGCCCGGAGGAAGACTGTGACCGCC 163211 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 163210 ATGGATGTCGTCTATGC 163194 >seq699 Length=292737 Score = 129 bits (142), Expect = 9e-26 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| ||||| || ||||||||||| || || |||||||||||||| | ||||| | Sbjct 232306 GAGATAATATCCAGGGCATCACCAAGCCTGCGATTCGTCGTCTGGCTCGCAGAGGTGGTG 232247 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| | | || | |||||||| || Sbjct 232246 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTTCTTG 232187 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | || || |||||||| | | |||||||| ||| Sbjct 232186 AGAATGTGATTCGTGATGCAGTGACTTACACTGAGCACGCCAGGAGGAAGACTGTGACCG 232127 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| ||||| | || || | | | ||||||||||| ||| Sbjct 232126 CCATGGATGTGGTGTATGCTTTGAAGAGGCAGGGAAGGACCCTCTATGGTTTTGGGGGTT 232067 Query 16698 A 16698 | Sbjct 232066 A 232066 >seq453 Length=1162932 Score = 120 bits (132), Expect = 5e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || |||||||||||||| || |||||| ||||||| | || Sbjct 1161394 CTCCGCGATAACATCCAGGGCATCACCAAGCCAGCCATTCGTCGTTTGGCTCGCAGAGGA 1161335 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || || |||| || |||| |||| || | ||||||||| Sbjct 1161334 GGTGTGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTC 1161275 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || || || | ||| |||||||||||| || ||||| || Sbjct 1161274 CTCGAGAACGTGATTAGAGACGCCGTGACCTACACCGAGCACGCTCGCCGCAAGACGGTG 1161215 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||||| | ||||| || |||| Sbjct 1161214 ACGGCCATGGACGTGGTCTACGCCCTGAA 1161186 >seq880 Length=362692 Score = 104 bits (114), Expect = 4e-18 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || | || |||||| | || ||||| Sbjct 334286 GATAACATCCAAGGCATCACCAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 334345 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| ||||| | | | ||| | ||||||||||| || Sbjct 334346 AAGCGCATCAGCGGCCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCCTGGAG 334405 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 334406 AATGTGATTCGCGATGCTGTGACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 334465 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || | | | |||||||| ||| ||||| Sbjct 334466 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGAAGAACCCTCTATGGTTTCGGAGGTTAA 334525 >seq536 Length=648542 Score = 100 bits (110), Expect = 4e-17 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || | || |||||| | || ||||| Sbjct 584206 GATAACATCCAAGGCATCACCAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 584265 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| ||||| | | | ||| | ||||||||| | || Sbjct 584266 AAGCGCATCAGCGGCCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 584325 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 584326 AATGTGATTCGCGATGCTGTGACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 584385 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || | | | |||||||| ||| ||||| Sbjct 584386 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGAAGAACCCTCTATGGTTTCGGAGGTTAA 584445 >seq343 Length=166985 Score = 100 bits (110), Expect = 4e-17 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||| || || || | || |||||| | || ||||| Sbjct 120190 GATAACATCCAAGGCATCACGAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 120249 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| ||||| | | | ||| | ||||||||| | || Sbjct 120250 AAGCGCATCAGCGGCCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 120309 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 120310 AATGTGATTCGCGATGCTGTGACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 120369 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | | |||||||| ||| ||||| Sbjct 120370 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGACGAACCCTCTATGGTTTCGGAGGTTAA 120429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065921612564