Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq96 345 5e-90 seq1073 91.5 2e-13 seq553 89.7 6e-13 >seq96 Length=556063 Score = 345 bits (382), Expect = 5e-90 Identities = 536/760 (71%), Gaps = 12/760 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || ||||| ||||| ||||||||||| ||| | || | Sbjct 6942 TGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCT 7001 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| || || ||||| ||||| || | Sbjct 7002 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCAT 7061 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| | || || | ||| | |||||| ||| || | || | || | Sbjct 7062 GGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTAACCGTCGCAG 7121 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||| ||| || | | | || ||| | | |||| ||||||||| | | | Sbjct 7122 TTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTAAAGCAC 7181 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 ||||||| | || |||| ||| | || || || ||||||||||| || || || | Sbjct 7182 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATG 7241 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || || ||| | || || ||||| | |||| ||| | | Sbjct 7242 GCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATT---C 7298 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||||||||||||| ||| || | ||| || || || | Sbjct 7299 AATTGCGACCTTATAATGCAATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTAT 7358 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 |||| || ||||| | ||||| | ||||||| ||||| ||| |||||||| |||| Sbjct 7359 TCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAG 7418 Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || |||| |||| || |||| ||||||| ||||| ||||| | ||||| | Sbjct 7419 CTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCAT 7475 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || || | | || | ||||||| | |||||||||||||||| Sbjct 7476 TTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTG 7535 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| ||||||||||||| | ||||||||| || ||||||| || || ||| Sbjct 7536 CTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 7595 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||| || | ||||| |||| Sbjct 7596 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAA 7655 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTT 138628 ||||| | |||||||| ||||| ||||| | || || Sbjct 7656 TCTTTAGGGTTGCTTTTTCCAATAAATGTTGGTTACATTT 7695 Score = 170 bits (188), Expect = 2e-37 Identities = 190/254 (75%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 138624 CACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATT 138683 || ||||||||| | ||||| || || | | | | |||| ||| | |||| | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||||| || || |||||||| || ||||| ||||| || || ||||| |||||||| ||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 |||| |||||| ||||| ||||||||||| || ||||| | ||||||||| | ||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCA 138863 |||||||| || ||||| ||||| |||||| || | | ||||| || || | || Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 138864 AGAGGCAACGCTCT 138877 | || |||||||| Sbjct 9114 CGTGGAAACGCTCT 9127 >seq1073 Length=358613 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||||| || || |||||| | | ||||| ||||| | ||||||||| |||| | ||| Sbjct 128343 GGTCTGGCCCTGAACCTATGTGTCTATGACTTCGTCTT--AAGAAATTCATGCAACGGAA 128400 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAG 138792 ||||||||||| ||||| |||||||| || || |||||| | || |||| Sbjct 128401 GATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAG 128449 >seq553 Length=724905 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 138411 CATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCT 138470 |||||| |||| || || || | | || | |||| || | || ||||||||||||||| Sbjct 591237 CATATGGTGGGAGTTGCTGGGGTGTTGGGCGCTGCTTTGTTATGCGCTATTCATGGTGCT 591178 Query 138471 ACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAA 138530 || || |||||||||| | ||||||||| || ||||||| || | ||| | Sbjct 591177 ACCCTAAAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTGTGTTTTTAAC 591118 Query 138531 CCTACTCAAG---AA---GAAGAAACCTATTCAATGGTTACTGC 138568 || ||||||| || |||||||| ||||||||||| || || Sbjct 591117 CCAACTCAAGCTCAAGCTGAAGAAACTTATTCAATGGTCACCGC 591074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627888342259200