Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq96 237 2e-57 >seq96 Length=556063 Score = 237 bits (262), Expect = 2e-57 Identities = 434/633 (69%), Gaps = 2/633 (0%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || ||||| || || | || |||||||| Sbjct 6932 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTAGGTTGGTCTGGC 6991 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||| | ||| || || || Sbjct 6992 CTATTTCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTCCACAGGTACAACCTTT 7051 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || |||| | ||| || ||| | || || ||||||||| Sbjct 7052 GTAACTTCATGGTATACCCATGAATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTTTTA 7111 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || | ||||| || || || | | || | | | || | ||||||| |||||||| Sbjct 7112 ACCGTCGCAGTTTCCACTCCGGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGT 7171 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||| | ||||||||||| || || |||| ||||||||| || ||||||| ||||| Sbjct 7172 CCTAAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTT 7231 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || ||||||| | || ||||| |||||||| ||| | | || ||||| |||| || Sbjct 7232 GCTCTACATGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 7291 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTC-AGCAGTTATTGCAGTATTCAC 172213 | || | || ||||| || ||| | |||||||| || | |||| || || Sbjct 7292 TCTATTCAATTGCGACCTTATAATGCAATCGCATTCTCTAGTCG-AATTGTTGTTTTTGT 7350 Query 172214 GAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGG 172273 | || ||||| ||||| |||||||| | ||||||| || || || ||||| Sbjct 7351 TTATGTATTCCTAATTTATCCGCTAGGTCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGG 7410 Query 172274 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 ||| ||||| || ||||| | || | || | || || || || ||| || | || Sbjct 7411 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 7470 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 ||||||||||||||||| || || || | | || | || | ||||||| || || Sbjct 7471 CCCATTTCATATGATGGGAGTTGCTGGGGTGTTGGGCGCTGCTCTGTTATGTGCTATTCA 7530 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGA 172426 |||||| || || | || || || | |||||| Sbjct 7531 TGGTGCTACTATAGAAAATACTTTATTTGAAGA 7563 Score = 116 bits (128), Expect = 4e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||| ||||||| || ||||| || | | | |||||| || | || | || Sbjct 8873 ACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGT 8932 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| || Sbjct 8933 CGGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGA 8992 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 ||| | || ||||| || |||||||| || || ||||| | ||||||||||| | || Sbjct 8993 AGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGC 9052 Query 172754 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCC 172813 |||||| | || ||||| || ||||| ||| || | |||| || || || | || Sbjct 9053 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACC 9112 Query 172814 ACGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 9113 CCGTGGAAACGCTCTTTAA 9131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570196461402720