Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1231 93.3 4e-14 seq297 91.5 1e-13 seq49 84.2 2e-11 >seq1231 Length=361431 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| || ||||||||| |||||| | || |||||| | ||| Sbjct 154489 GATAAGGAAGGCATCCCTCCTGACCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 154430 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | ||||||||||||||||| || || ||| |||| || || || Sbjct 154429 GATGGTCGAACTCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGTTTTG 154370 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| ||||| ||||| || Sbjct 154369 AGGCTGAGGGGAGGAACTATGAT 154347 >seq297 Length=529300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | |||||| | || |||||| || Sbjct 439643 AACATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCC 439702 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || || ||||| ||||| || ||||| || || || Sbjct 439703 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAC 439762 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||||||||| ||||| || | | ||| | | |||||| Sbjct 439763 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTAGCCGATTAC 439822 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 439823 AACATCCAGAAGGAATCGAC 439842 >seq49 Length=410483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || |||| || || | || || |||| |||||| Sbjct 302815 CAAGATGCAGATTTTCGTGAAGACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAG 302874 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 302875 CAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCACCAGA 302934 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | |||||| | |||||||| |||||||||| | | | | | || || Sbjct 302935 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACCTTGGCTGACTA 302994 Query 24167 TAACATTCAAAAAG 24180 |||||| || |||| Sbjct 302995 TAACATCCAGAAAG 303008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429882826052940