Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2255 105 5e-18 seq736 96.9 3e-15 seq176 95.1 1e-14 >seq2255 Length=141741 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||||| |||||||||||||| ||||||||||| || Sbjct 96270 CCCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC 96211 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||||| | || ||||| ||| | || | || ||| ||||| || Sbjct 96210 AAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 96151 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| |||| |||||| | | | ||| || | ||| Sbjct 96150 AATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCAC 96091 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 96090 TTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||||| || ||||||||||| |||||||||||||| Sbjct 139788 CCCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 139847 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||||| || ||||| ||| |||| | || ||| ||||| ||| Sbjct 139848 AAGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 139907 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| |||| |||||| | | | | ||| || | ||| Sbjct 139908 GATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATAGTATCAGAGCTTTCCAC 139967 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || || || |||| ||||| ||||| || ||||| Sbjct 139968 TTCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 140015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || |||||||||||||| | ||| | ||| Sbjct 95570 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCC 95511 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | || |||| ||| ||||| || | ||||| ||||| Sbjct 95510 TCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 95451 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCGTTTCCACGGTGAT 16899 || ||||| ||| || | | | | ||| | ||| || || ||||| |||||| Sbjct 95450 TGGATCTTTGC--CTTGACATTGTCAATAGTAT--CCGAGCTTTCAACTTCCAAGGTGAT 95395 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || |||||||| || ||||| Sbjct 95394 TGTCTTCCCGGTAAGGGTCTTGACAAATATTTGCAT 95359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || || ||||||||||| || |||||||||||||| Sbjct 95813 CCACCACGTAGTCGGAGCACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 95754 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || ||| | || |||||||| ||||| || Sbjct 95753 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGA 95694 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TC 16884 | ||||| ||||| || ||||| ||| || | | | | ||| | ||| || || Sbjct 95693 ATTCCCTCCTTGTCCTGGATCTTTGC--CTTGACATTGTCAATAGTAT--CCGAGCTTTC 95638 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| || || || || || || |||||||| |||||||| Sbjct 95637 AACTTCCAAGGTGATTGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 95587 >seq736 Length=481145 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||||||||| || | ||| | | ||| Sbjct 406265 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCC 406324 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || | || || |||||| || | ||||| ||||| Sbjct 406325 TCCAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGGATACCCTCCTTGTCC 406384 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGG 16901 || | | ||| || | | | | |||| ||| |||| || |||| ||||||| Sbjct 406385 TGGATCTTCGCCTTGACATTGTCAATGGTGT--CCGAGCTCTCGACCTCCAGAGTGATGG 406442 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||| || || |||||||||||||| Sbjct 406443 TCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 406476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||| || | ||| | | ||| Sbjct 406493 AGCACTAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCC 406552 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || |||| ||| ||||| || | |||||| || || Sbjct 406553 TCGAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTATCT 406612 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | |||||| | || |||| ||||||||| Sbjct 406613 TGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGATGGTC 406672 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || |||||||| Sbjct 406673 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 406704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 406949 AGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCGTCC 407008 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| || || ||| | |||||| ||||| Sbjct 407009 TCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATGCCCTCCTTGTCC 407068 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | |||| || | |||||||| Sbjct 407069 TGGATCTTAGC--CTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGG 407126 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || || ||||| Sbjct 407127 TCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 407160 >seq176 Length=136227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| || ||||||||||| | ||| | ||||| Sbjct 89318 AGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCC 89377 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| || | || | || ||| ||||| || | |||||| ||||| Sbjct 89378 TCCAATTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 89437 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | || || | ||| ||| | ||| ||||| Sbjct 89438 TGGATTTTGGCCTTTACGTTGTCGATCGTATCAGAGCTCTCGACTTCTAAGGTTATGGTC 89497 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || |||||||| || |||||||| Sbjct 89498 TTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 89529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || || || ||||| || |||||||||||||| | |||| || |||| Sbjct 89545 CAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTC 89604 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||||||| ||||| || | || |||| ||| || || || | ||||| ||||| Sbjct 89605 CTCCAATTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGGGGAATTCCCTCCTTGTC 89664 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | | || ||| | ||| || | ||||| Sbjct 89665 TTGGATCTTGGC--CTTGACATTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATT 89722 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || || ||||| || |||||||| || | |||||| |||| Sbjct 89723 GTCTTGCCGGTTAGGGTTTTGACGAAGACCTGCATATTGT 89762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||| || ||||||||||| |||||||| || || Sbjct 88847 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 88906 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| ||||| || || || | ||||||| ||| || || || Sbjct 88907 AGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 88966 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | || ||| | ||| Sbjct 88967 ATACCCTCCTTGTCTTGGATCTTGGC--CTTCACGTTATCAATGGTATCGGAGCTCTCGA 89024 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| ||||| || |||||||| ||||||||||| Sbjct 89025 CCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || || |||||||| |||||||||||||| | |||| | ||||||||||||| Sbjct 89099 TGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAATTGC 89158 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || |||| | || ||| ||||| || | |||||| || || || || Sbjct 89159 TTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCTTGGATCTTG 89218 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | || || | ||| ||| | ||| || || || |||| Sbjct 89219 GC--CTTCACGTTGTCGATGGTATCAGAGCTCTCGACTTCTAGGGTTATTGTCTTCCCGG 89276 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || ||||| Sbjct 89277 TTAGGGTTTTGACGAAGATTTGCAT 89301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405037899222520