Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq199 113 3e-20 seq2255 111 1e-19 seq736 111 1e-19 seq708 109 4e-19 seq176 105 4e-18 seq244 100 2e-16 seq297 82.4 5e-11 >seq199 Length=541073 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| ||||||||||||||| || ||||||||||| || || |||||| | Sbjct 347651 AAGCCCGTTCACTTGGCTGTGGTTTCACTGGATAGTAGATAAGGACAGTGGGAATCTCTT 347592 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||| ||||||||||||||||||| Sbjct 347591 TAATCCATTCATGCGTGTCACTAATTAGATGACGA 347557 >seq2255 Length=141741 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | |||||| || |||||| |||||||||||| ||||| |||| | Sbjct 96269 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAG-C 96211 Query 38151 AAAACACGTTC-GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | ||| ||| || | || || || ||||| || | | || || || | ||| Sbjct 96210 AAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 96151 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || |||||| ||||| ||||||||| | | |||||| ||||| || Sbjct 96150 AATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCAC 96091 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| ||||| || |||| |||||||| ||||||||||| Sbjct 96090 TTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCAT 96043 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||| || || || |||||||||||| ||||| || | | Sbjct 139789 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTC-GGC 139847 Query 38151 AAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | || || || ||||| || | | || || || | || Sbjct 139848 AAGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 139907 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| ||||| ||||||||| | | |||||| ||||| || Sbjct 139908 GATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATAGTATCAGAGCTTTCCAC 139967 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || ||||| || || || ||||| |||||||| || || ||||| Sbjct 139968 TTCCAAAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 140015 >seq736 Length=481145 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| ||||| ||| | ||||| || |||||| ||||||||||| |||| Sbjct 406020 TACCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAG 406079 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | || || || ||||| || | | || || || | | Sbjct 406080 CCAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTG 406139 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||| | || || || || || | Sbjct 406140 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGCTCTCGA 406199 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| || || |||| ||| |||||||| |||||||| Sbjct 406200 CCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 406248 >seq708 Length=137701 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||||| ||||||||| || ||||||||| |||| || |||||||| Sbjct 33343 AAGCTCGTTCCCTTGGTTGTGGTTTCACTGGATAGTAGACAGGGACAATGGGAATCTCGT 33284 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| ||||||||||||||||||| Sbjct 33283 TAATCCATTCATGCATGTCACTAATTAGATGACGA 33249 >seq176 Length=136227 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| ||||| || | ||| ||||||||| || |||||||| | Sbjct 88845 TACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCG 88904 Query 38149 ACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | |||| |||||||| || ||||| || || || | || ||||| | | Sbjct 88905 -CAAGGGTCCTACCGTCCTCTAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 88963 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || || ||||| || || |||||| || | | ||||| || || Sbjct 88964 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCG 89023 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 89024 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 89073 >seq244 Length=134009 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||| |||||| ||||||||||||| |||| | ||||| | Sbjct 66864 AAGCCCATTCCCTTGGCTATGGTTTTGCTAGATAGTAGACAGGGACAGTGAGGATCTCAT 66805 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||||| |||||||||||||||| Sbjct 66804 TAATCCATTCATGCGCATCACTAATTAGATGAC 66772 >seq297 Length=529300 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || |||||||| | | || |||| || | || || ||||| || Sbjct 439836 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 439777 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| || || || | ||| | ||| || ||||| || || ||||||||| Sbjct 439776 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 439717 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || || || |||| ||||| || |||||||| | |||||||||| Sbjct 439716 TCGATGGTGTCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 439657 Query 38307 AATATCTGCATGTTT 38321 || |||||||||||| Sbjct 439656 AAGATCTGCATGTTT 439642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905774148988